Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

38185392 .. 38186428

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCCCAAGCTCGACCTCCACTGCGCTGCCACCGAACCCAAGGAGGCCAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGACGCCATCGAGCGCTTCACTGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGAGAGAATTGAAAATACCATCAATTGGGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

80

Amino Acids

8.93

Weight (kDa)

5.9

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	64
AcyI	GRCGYC	2 cut(s)	87, 108
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	70, 230
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	10, 52
AluI	AGCT	2 cut(s)	10, 52
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	3 cut(s)	45, 61, 180
ApeKI	GCWGC	2 cut(s)	26, 174
AspLEI	GCGC	2 cut(s)	26, 99
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	73, 115
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	13, 186
BccI	CCATC	3 cut(s)	98, 140, 232
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	3 cut(s)	27, 64, 175
BlsI	GCNGC	3 cut(s)	28, 65, 176
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	39, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 230
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	2 cut(s)	70, 230
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	13, 186
BshFI	GGCC	3 cut(s)	47, 63, 182
BslI	CCNNNNNNNGG	2 cut(s)	70, 230
BsnI	GGCC	3 cut(s)	47, 63, 182
Bsp1286I	GDGCHC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	47, 63, 182
BssECI	CCNNGG	2 cut(s)	39, 55
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	87, 108
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	26, 99
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	13, 186
BsuRI	GGCC	3 cut(s)	47, 63, 182
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 102
CfoI	GCGC	2 cut(s)	26, 99
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	95, 116
CviAII	CATG	2 cut(s)	161, 169
CviJI	RGCY	7 cut(s)	10, 47, 52, 63, 118, 149, 182
CviKI_1	RGCY	7 cut(s)	10, 47, 52, 63, 118, 149, 182
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	164, 172
FaiI	YATR	2 cut(s)	162, 170
FatI	CATG	2 cut(s)	160, 168
Fnu4HI	GCNGC	3 cut(s)	27, 64, 175
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	27, 64, 175
GlaI	GCGC	2 cut(s)	25, 98
GluI	GCNGC	3 cut(s)	27, 64, 175
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	47, 63, 182
HgaI	GACGC	2 cut(s)	95, 116
HhaI	GCGC	2 cut(s)	26, 99
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	2 cut(s)	164, 172
Hin6I	GCGC	2 cut(s)	24, 97
HinP1I	GCGC	2 cut(s)	24, 97
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	2 cut(s)	73, 115
Hpy99I	CGWCG	2 cut(s)	89, 116
HpyAV	CCTTC	3 cut(s)	130, 148, 229
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	2 cut(s)	164, 172
HspAI	GCGC	2 cut(s)	24, 97
LmnI	GCTCC	2 cut(s)	57, 201
LpnPI	CCDG	2 cut(s)	41, 68
Lsp1109I	GCAGC	2 cut(s)	13, 186
LweI	GCATC	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	212, 228
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	26, 37, 53, 64, 67, 161, 199
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	164, 172
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	28, 65, 176
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	110
SatI	GCNGC	3 cut(s)	27, 64, 175
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	3 cut(s)	12, 18, 54
SfaNI	GCATC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	212, 228
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	5 cut(s)	12, 69, 93, 114, 141
TasI	AATT	2 cut(s)	212, 228
TauI	GCSGC	1 cut(s)	66
TscAI	CASTG	2 cut(s)	26, 109
TseI	GCWGC	2 cut(s)	26, 174
TspRI	CASTG	2 cut(s)	26, 109
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.