Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

12578173 .. 12582761

Gene Structure 4589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGAGCCAAAGTTCCCACCAACAATACAGCCCTAATTCTTTATCCCTCTTTTTCCCAAACAACACCTCTCTCTCCCTCCGCAAGCTTTGCAGCTCCTCGAACTGGAACTTACCGCCGAGATCGACGAGGTCTGCACCGCAACCTACCGCTAACAGTGACGAGCTCCTCCGTCGACGTTAATGAGGAATCTATAAGGACTAGCCCAGAACTTCTGCTAAATCCTGTTTTGATATGTCAAAATGAGGAATGCTTAATTGAGACATCTATTAGTTCCCTTCGTATAAGCCTTAAGATTAGCAGGCCTGAAGATTGGGAGAAAGTCCCTGATCCTAAGAAGTTTTGGATGCACCGGCCTTGCAAGATGATTTCTGCTAATGCTGGTGGACTGGTTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

134

Amino Acids

14.79

Weight (kDa)

9.45

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	60 - 106	1.3e-08	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	4 cut(s)	81, 115, 139, 149
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	290
AluBI	AGCT	3 cut(s)	87, 95, 165
AluI	AGCT	3 cut(s)	87, 95, 165
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	302, 353
ApeKI	GCWGC	2 cut(s)	92, 395
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	104, 382
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	93, 396
BlsI	GCNGC	2 cut(s)	94, 397
BmsI	GCATC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	109, 393
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	109, 393
BseRI	GAGGAG	2 cut(s)	87, 157
BseXI	GCAGC	2 cut(s)	104, 382
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	304, 355
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	304, 355
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	121, 328
BspACI	CCGC	4 cut(s)	81, 115, 139, 149
BspANI	GGCC	2 cut(s)	304, 355
BspPI	GGATC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	109, 393
BssAI	RCCGGY	1 cut(s)	351
BssMI	GATC	2 cut(s)	121, 328
Bst4CI	ACNGT	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	85, 302
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	124, 331
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	121, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	104, 382
BsuRI	GGCC	2 cut(s)	304, 355
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	85, 302
Cfr10I	RCCGGY	1 cut(s)	351
CviJI	RGCY	9 cut(s)	8, 32, 87, 95, 165, 204, 288, 304, 355
CviKI_1	RGCY	9 cut(s)	8, 32, 87, 95, 165, 204, 288, 304, 355
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	123, 330
DpnII	GATC	2 cut(s)	121, 328
Ecl136II	GAGCTC	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	167
FaiI	YATR	4 cut(s)	194, 235, 284, 400
FaqI	GGGAC	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	93, 396
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	93, 396
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	93, 396
HaeIII	GGCC	2 cut(s)	304, 355
HapII	CCGG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	175, 386
Hpy8I	GTNNAC	2 cut(s)	175, 386
Hpy99I	CGWCG	3 cut(s)	129, 176, 179
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	92, 136, 349, 360, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	121, 328
LmnI	GCTCC	2 cut(s)	100, 170
LpnPI	CCDG	9 cut(s)	90, 219, 237, 286, 318, 339, 365, 366, 374
Lsp1109I	GCAGC	2 cut(s)	104, 382
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	123, 330
MboI	GATC	2 cut(s)	121, 328
MboII	GAAGA	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	2 cut(s)	36, 255
MnlI	CCTC	8 cut(s)	58, 78, 88, 108, 122, 178, 178, 238
MseI	TTAA	3 cut(s)	180, 254, 291
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	121, 328
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	94, 397
Psp124BI	GAGCTC	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	180, 254, 291
SatI	GCNGC	2 cut(s)	93, 396
Sau3AI	GATC	2 cut(s)	121, 328
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	70, 89, 97, 133, 147, 167, 180
SfaNI	GCATC	1 cut(s)	336
SgrDI	CGTCGACG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	36, 255
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	4 cut(s)	81, 115, 139, 149
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	100, 124, 174
TasI	AATT	2 cut(s)	36, 255
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	180, 254, 291
Tru9I	TTAA	3 cut(s)	180, 254, 291
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	92, 395
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	162
Tth111I	GACNNNGTC	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.