Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001163.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

159240 .. 161376

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001163.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcccaagcttgacctccactgcgctgccaccgagcccaaggaggccaagctccagggaggccgcttcgaggagggcatcactgacaccatcgagcgcttcaccgacaccgttgagcccttcaccgagtccatctccttcgacaaagccctctacaagcatgacatcgtgggcagcaaggcccacgcctcaatgctccctaaacagaagatcaaaaactccggtggtggttttgaggctcctggaggtttcctcaaggaagtgtcattgcatgatgtgaggttggatccaactttaaaatatgggaagacacagcaaacaaatctgaagtacatgttgatgttggattctgatagtttaattactttggagctttcgaaagacagctggtttagaaacccctggggcaccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

6.08

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	281, 294
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	332
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	333
AjnI	CCWGG	3 cut(s)	54, 241, 401
AluBI	AGCT	4 cut(s)	10, 52, 373, 387
AluI	AGCT	4 cut(s)	10, 52, 373, 387
AlwI	GGATC	2 cut(s)	281, 294
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	3 cut(s)	45, 61, 180
ApeKI	GCWGC	2 cut(s)	26, 174
AspLEI	GCGC	2 cut(s)	26, 99
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	94, 115
AsuII	TTCGAA	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	39, 120
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	13, 186
BccI	CCATC	2 cut(s)	98, 140
BciT130I	CCWGG	3 cut(s)	56, 243, 403
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	3 cut(s)	27, 64, 175
BlsI	GCNGC	3 cut(s)	28, 65, 176
Bme1390I	CCNGG	3 cut(s)	56, 243, 403
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	240, 288, 409
BmrFI	CCNGG	3 cut(s)	56, 243, 403
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	4 cut(s)	119, 151, 237, 269
BpmI	CTGGAG	2 cut(s)	38, 264
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	39, 55, 401, 402
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	56, 243, 403
BseDI	CCNNGG	4 cut(s)	39, 55, 401, 402
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	13, 186
BshFI	GGCC	3 cut(s)	47, 63, 182
BshNI	GGYRCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	3 cut(s)	47, 63, 182
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	39, 120, 410
Bsp143I	GATC	2 cut(s)	210, 286
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	47, 63, 182
BspLI	GGNNCC	3 cut(s)	240, 288, 409
BspPI	GGATC	2 cut(s)	281, 294
BspT104I	TTCGAA	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	39, 55, 401, 402
BssMI	GATC	2 cut(s)	210, 286
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	56, 243, 403
Bst4CI	ACNGT	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	26, 99
BstKTI	GATC	2 cut(s)	213, 289
BstMBI	GATC	2 cut(s)	210, 286
BstNI	CCWGG	3 cut(s)	56, 243, 403
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	3 cut(s)	54, 241, 401
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	13, 186
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	47, 63, 182
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 81
CfoI	GCGC	2 cut(s)	26, 99
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	161, 272, 334
CviQI	GTAC	1 cut(s)	331
DpnI	GATC	2 cut(s)	212, 288
DpnII	GATC	2 cut(s)	210, 286
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	39, 120
Eco47III	AGCGCT	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	3 cut(s)	54, 241, 401
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	39, 120
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	164, 275, 337
FaiI	YATR	6 cut(s)	162, 273, 303, 335, 413, 415
FatI	CATG	3 cut(s)	160, 271, 333
FauNDI	CATATG	1 cut(s)	413
Fnu4HI	GCNGC	3 cut(s)	27, 64, 175
FriOI	GRGCYC	2 cut(s)	39, 120
Fsp4HI	GCNGC	3 cut(s)	27, 64, 175
GlaI	GCGC	2 cut(s)	25, 98
GluI	GCNGC	3 cut(s)	27, 64, 175
GsuI	CTGGAG	2 cut(s)	38, 264
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	47, 63, 182
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	2 cut(s)	26, 99
Hin1II	CATG	3 cut(s)	164, 275, 337
Hin6I	GCGC	2 cut(s)	24, 97
HinP1I	GCGC	2 cut(s)	24, 97
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	128, 347
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	94, 115
Hpy188I	TCNGA	2 cut(s)	327, 352
HpyAV	CCTTC	2 cut(s)	130, 148
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	164, 275, 337
HspAI	GCGC	2 cut(s)	24, 97
Kzo9I	GATC	2 cut(s)	210, 286
LmnI	GCTCC	4 cut(s)	57, 201, 244, 370
LpnPI	CCDG	7 cut(s)	41, 68, 228, 235, 255, 373, 388
Lsp1109I	GCAGC	2 cut(s)	13, 186
LweI	GCATC	1 cut(s)	87
MalI	GATC	2 cut(s)	212, 288
MboI	GATC	2 cut(s)	210, 286
MboII	GAAGA	2 cut(s)	220, 319
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	3 cut(s)	39, 120, 410
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	264, 314, 324
MseI	TTAA	2 cut(s)	296, 359
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	56, 243, 403
MvaI	CCWGG	3 cut(s)	56, 243, 403
NdeI	CATATG	1 cut(s)	413
NdeII	GATC	2 cut(s)	210, 286
NlaIII	CATG	3 cut(s)	164, 275, 337
NlaIV	GGNNCC	3 cut(s)	240, 288, 409
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	377
PasI	CCCWGGG	1 cut(s)	402
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	28, 65, 176
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	3 cut(s)	54, 241, 401
PspGI	CCWGG	3 cut(s)	54, 241, 401
PspN4I	GGNNCC	3 cut(s)	240, 288, 409
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	296, 359
SatI	GCNGC	3 cut(s)	27, 64, 175
Sau3AI	GATC	2 cut(s)	210, 286
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	56, 243, 403
SduI	GDGCHC	3 cut(s)	39, 120, 410
SetI	ASST	7 cut(s)	12, 18, 54, 250, 284, 375, 389
SfaNI	GCATC	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	54, 241, 401
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	69, 93, 141, 377
TasI	AATT	1 cut(s)	360
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	296, 359
Tru9I	TTAA	2 cut(s)	296, 359
TscAI	CASTG	2 cut(s)	26, 88
TseI	GCWGC	2 cut(s)	26, 174
TspRI	CASTG	2 cut(s)	26, 88
XceI	RCATGY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.