Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

29239211 .. 29240426

Gene Structure 1216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCCAAGCTCGACCTCCACTGCGCTGCCACCGAGCCCAAGGAGGCCAAGCTCCAGGGAGGCCGCTTCAAGGAGGACATCACCGATGCCATCGAGCGCTTCACCGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGCTTCCAGCTCGATTTCTCAACTTCCATAATGCCGCTCGGCTCTTCTCCGATGTGCCTCCTCCCTCCGGAGAGCCTCCGTCGATTCCACCGCCTCAAAACCCTCTGTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGTGGGATTCTGAAGGACCGTTCAAACCTTTGCATGCGATGAATCCTACAAGGCTCGCCTTCATTCGCTCAACGCTGAGGGATCCATTATCTGCTAGGCCATTTGAAGGGCTCAAGTTTATTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGGTATATTATGCATCATCTTTCTTTTCCGCTTTAACACACAGCCATAGTTTCAAATTAGTCATTTACGCATTTTGGCAATGGGGATCAAATGGTGTCGTCTGGCTGAACTTGTCTATGGTAGATAAATTGTTGTCCATGATATTGGCAAAATTGTATCGATGCAATTCTGATGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004395 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009987 GO:0010420 GO:0016740 GO:0016741 GO:0031967 GO:0031975 GO:0032259 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_23

Protein Analysis

236

Amino Acids

26.1

Weight (kDa)

6.65

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	5 cut(s)	64, 240, 296, 360, 558
AclWI	GGATC	3 cut(s)	452, 465, 622
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	108
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	4 cut(s)	70, 272, 375, 482
AgsI	TTSAA	4 cut(s)	70, 400, 482, 583
AjnI	CCWGG	3 cut(s)	54, 336, 374
AluBI	AGCT	5 cut(s)	10, 52, 208, 215, 346
AluI	AGCT	5 cut(s)	10, 52, 208, 215, 346
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	318, 333
AlwI	GGATC	3 cut(s)	452, 465, 622
Aor13HI	TCCGGA	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	4 cut(s)	45, 61, 180, 473
ApeKI	GCWGC	2 cut(s)	26, 174
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	26, 99
AspS9I	GGNCC	2 cut(s)	181, 392
AsuHPI	GGTGA	3 cut(s)	73, 94, 115
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	457
BanII	GRGCYC	4 cut(s)	39, 120, 348, 489
Bbv12I	GWGCWC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	13, 186
BccI	CCATC	2 cut(s)	98, 140
BceAI	ACGGC	2 cut(s)	95, 307
BciT130I	CCWGG	3 cut(s)	56, 338, 376
BcoDI	GTCTC	2 cut(s)	318, 333
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	5 cut(s)	27, 64, 175, 240, 360
BlsI	GCNGC	5 cut(s)	28, 65, 176, 241, 361
Bme1390I	CCNGG	3 cut(s)	56, 338, 376
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	181, 392
BmiI	GGNNCC	2 cut(s)	373, 459
BmrFI	CCNGG	3 cut(s)	56, 338, 376
BmsI	GCATC	4 cut(s)	76, 551, 680, 691
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	39, 55
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 272, 375, 482
Bse3DI	GCAATG	2 cut(s)	363, 614
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	3 cut(s)	56, 338, 376
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	4 cut(s)	70, 272, 375, 482
BseMI	GCAATG	2 cut(s)	363, 614
BseMII	CTCAG	2 cut(s)	443, 519
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	13, 186
BshFI	GGCC	4 cut(s)	47, 63, 182, 475
BshVI	ATCGAT	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	273, 369
BslI	CCNNNNNNNGG	4 cut(s)	70, 272, 375, 482
BsmAI	GTCTC	2 cut(s)	318, 333
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	47, 63, 182, 475
Bsp1286I	GDGCHC	4 cut(s)	39, 120, 348, 489
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	457, 614
BspACI	CCGC	5 cut(s)	64, 240, 296, 360, 558
BspANI	GGCC	4 cut(s)	47, 63, 182, 475
BspCNI	CTCAG	2 cut(s)	444, 520
BspDI	ATCGAT	1 cut(s)	688
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	373, 459
BspPI	GGATC	3 cut(s)	452, 465, 622
BspQI	GCTCTTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	363, 614
BssECI	CCNNGG	2 cut(s)	39, 55
BssMI	GATC	2 cut(s)	457, 614
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	56, 338, 376
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	348, 411, 432
BstDEI	CTNAG	3 cut(s)	351, 452, 528
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	26, 99
BstKTI	GATC	2 cut(s)	460, 617
BstMAI	GTCTC	2 cut(s)	318, 333
BstMBI	GATC	2 cut(s)	457, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 356, 365
BstNI	CCWGG	3 cut(s)	56, 338, 376
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	54, 336, 374
BstV1I	GCAGC	2 cut(s)	13, 186
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	688
BsuRI	GGCC	4 cut(s)	47, 63, 182, 475
BsuTUI	ATCGAT	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	348, 411, 432
CfoI	GCGC	2 cut(s)	26, 99
Cfr13I	GGNCC	2 cut(s)	181, 392
ClaI	ATCGAT	1 cut(s)	688
CseI	GACGC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	374
CviAII	CATG	4 cut(s)	161, 169, 410, 667
DdeI	CTNAG	3 cut(s)	351, 452, 528
DpnI	GATC	2 cut(s)	459, 616
DpnII	GATC	2 cut(s)	457, 614
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	4 cut(s)	39, 120, 348, 489
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	3 cut(s)	54, 336, 374
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	4 cut(s)	39, 120, 348, 489
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	4 cut(s)	164, 172, 413, 670
FaiI	YATR	9 cut(s)	162, 170, 234, 411, 535, 540, 576, 647, 668
FatI	CATG	4 cut(s)	160, 168, 409, 666
Fnu4HI	GCNGC	5 cut(s)	27, 64, 175, 240, 360
FriOI	GRGCYC	4 cut(s)	39, 120, 348, 489
Fsp4HI	GCNGC	5 cut(s)	27, 64, 175, 240, 360
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	25, 98
GluI	GCNGC	5 cut(s)	27, 64, 175, 240, 360
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	47, 63, 182, 475
HapII	CCGG	2 cut(s)	273, 369
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	26, 99
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	164, 172, 413, 670
Hin6I	GCGC	2 cut(s)	24, 97
HinP1I	GCGC	2 cut(s)	24, 97
HinfI	GANTC	4 cut(s)	128, 289, 383, 418
HpaII	CCGG	2 cut(s)	273, 369
HphI	GGTGA	3 cut(s)	73, 94, 115
Hpy188I	TCNGA	5 cut(s)	256, 333, 388, 529, 700
Hpy188III	TCNNGA	1 cut(s)	273
Hpy99I	CGWCG	4 cut(s)	110, 116, 289, 328
HpyAV	CCTTC	5 cut(s)	130, 148, 383, 445, 476
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	409, 542, 693, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 356, 365
HpyF3I	CTNAG	3 cut(s)	351, 452, 528
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	164, 172, 413, 670
HspAI	GCGC	2 cut(s)	24, 97
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	457, 614
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	57, 201
Lsp1109I	GCAGC	2 cut(s)	13, 186
LweI	GCATC	4 cut(s)	76, 551, 680, 691
MabI	ACCWGGT	1 cut(s)	374
MaeI	CTAG	1 cut(s)	471
MalI	GATC	2 cut(s)	459, 616
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	2 cut(s)	457, 614
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	4 cut(s)	39, 120, 348, 489
MluCI	AATT	5 cut(s)	519, 584, 656, 680, 694
MlyI	GAGTC	1 cut(s)	137
Mph1103I	ATGCAT	1 cut(s)	544
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	2 cut(s)	563, 709
MspI	CCGG	2 cut(s)	273, 369
MspR9I	CCNGG	3 cut(s)	56, 338, 376
MvaI	CCWGG	3 cut(s)	56, 338, 376
MwoI	GCNNNNNNNGC	3 cut(s)	347, 356, 365
NdeII	GATC	2 cut(s)	457, 614
NlaIII	CATG	4 cut(s)	164, 172, 413, 670
NlaIV	GGNNCC	2 cut(s)	373, 459
NmeAIII	GCCGAG	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	289, 383, 418
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	28, 65, 176, 241, 361
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	3 cut(s)	54, 336, 374
PspGI	CCWGG	3 cut(s)	54, 336, 374
PspN4I	GGNNCC	2 cut(s)	373, 459
PspPI	GGNCC	2 cut(s)	181, 392
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	563, 709
SatI	GCNGC	5 cut(s)	27, 64, 175, 240, 360
Sau3AI	GATC	2 cut(s)	457, 614
Sau96I	GGNCC	2 cut(s)	181, 392
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	56, 338, 376
SduI	GDGCHC	4 cut(s)	39, 120, 348, 489
SetI	ASST	9 cut(s)	12, 18, 54, 210, 217, 348, 377, 406, 534
SexAI	ACCWGGT	1 cut(s)	374
SfaNI	GCATC	4 cut(s)	76, 551, 680, 691
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	5 cut(s)	519, 584, 656, 680, 694
SsiI	CCGC	5 cut(s)	64, 240, 296, 360, 558
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	54, 336, 374
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	7 cut(s)	12, 93, 114, 141, 217, 287, 688
TasI	AATT	5 cut(s)	519, 584, 656, 680, 694
TauI	GCSGC	3 cut(s)	66, 242, 362
TfiI	GAWTC	3 cut(s)	289, 383, 418
Tru1I	TTAA	2 cut(s)	563, 709
Tru9I	TTAA	2 cut(s)	563, 709
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	2 cut(s)	26, 174
TspDTI	ATGAA	2 cut(s)	427, 431
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.