Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000511.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

26068 .. 26352

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000511.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgcccaagctcgacctctactgcgctgccaccgagcccaaggaggccaagctccagggaggccgcttcgaggagggcatcaccgacgccatcgagcgcttcaccgaagccgtcgagcccttcactgagtccatctccttcgacaaagccctctacaagcatgacatcatgggcagtattgaggcgtggggcagcaaggcccacgcctcaatgctccccaaacaagtccttcactttagtttctccattttcagttctctcaatttctcaatttctagggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

94

Amino Acids

10.53

Weight (kDa)

5.53

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	10, 52
AluI	AGCT	2 cut(s)	10, 52
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	3 cut(s)	45, 61, 198
ApeKI	GCWGC	2 cut(s)	26, 192
AspLEI	GCGC	2 cut(s)	26, 99
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	73, 94
BanII	GRGCYC	2 cut(s)	39, 120
BbvI	GCAGC	2 cut(s)	13, 204
BccI	CCATC	2 cut(s)	98, 140
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	3 cut(s)	27, 64, 193
BlsI	GCNGC	3 cut(s)	28, 65, 194
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	39, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	13, 204
BshFI	GGCC	3 cut(s)	47, 63, 200
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	3 cut(s)	47, 63, 200
Bsp1286I	GDGCHC	2 cut(s)	39, 120
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	47, 63, 200
BspCNI	CTCAG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	39, 55
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	26, 99
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	13, 204
BsuRI	GGCC	3 cut(s)	47, 63, 200
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	2 cut(s)	26, 99
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	1 cut(s)	95
CviAII	CATG	2 cut(s)	161, 169
CviJI	RGCY	9 cut(s)	10, 37, 47, 52, 63, 110, 118, 149, 200
CviKI_1	RGCY	9 cut(s)	10, 37, 47, 52, 63, 110, 118, 149, 200
DdeI	CTNAG	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	39, 120
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	39, 120
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	164, 172
FaiI	YATR	2 cut(s)	162, 170
FatI	CATG	2 cut(s)	160, 168
Fnu4HI	GCNGC	3 cut(s)	27, 64, 193
FriOI	GRGCYC	2 cut(s)	39, 120
Fsp4HI	GCNGC	3 cut(s)	27, 64, 193
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	25, 98
GluI	GCNGC	3 cut(s)	27, 64, 193
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	47, 63, 200
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	26, 99
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	164, 172
Hin6I	GCGC	2 cut(s)	24, 97
HinP1I	GCGC	2 cut(s)	24, 97
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	2 cut(s)	73, 94
Hpy99I	CGWCG	2 cut(s)	89, 116
HpyAV	CCTTC	3 cut(s)	130, 148, 239
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	164, 172
HspAI	GCGC	2 cut(s)	24, 97
LmnI	GCTCC	2 cut(s)	57, 219
LpnPI	CCDG	2 cut(s)	41, 68
Lsp1109I	GCAGC	2 cut(s)	13, 204
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	39, 120
MluCI	AATT	2 cut(s)	262, 270
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	26, 37, 53, 64, 67, 161, 175, 217
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	164, 172
PkrI	GCNGC	3 cut(s)	28, 65, 194
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	199
SatI	GCNGC	3 cut(s)	27, 64, 193
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	39, 120
SetI	ASST	3 cut(s)	12, 18, 54
SfaNI	GCATC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	262, 270
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	5 cut(s)	12, 69, 93, 114, 141
TasI	AATT	2 cut(s)	262, 270
TauI	GCSGC	1 cut(s)	66
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	26, 192
TspRI	CASTG	1 cut(s)	130
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.