Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

59570471 .. 59573505

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTACCAGAAGATCAAAAACTCCGGTGGTGGTTTTGAGGCTCTTGGAGGTTTCCTCAAGGAAGTGTCATTGCATGATGTGAGGTTGGATCCAACTTCACAATATGGGAAGACACAGCAAACAAATCTGAAGTATCTGTTGTTGTTGGATTCTAATAGTTTAATTACTTTGGAGCTTTCGAAAGACAACTGGTTTAGAAACCCCTGGGGCACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AbfB Glyco_hydro_127

Protein Analysis

72

Amino Acids

8.19

Weight (kDa)

8.03

Isoelectric Point (pI)

11.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	83, 96
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AlwI	GGATC	2 cut(s)	83, 96
AsuII	TTCGAA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	90, 211
BmrFI	CCNGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	203, 204
BsaWI	WCCGGW	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	203, 204
BseMI	GCAATG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	12, 88
BspLI	GGNNCC	2 cut(s)	90, 211
BspPI	GGATC	2 cut(s)	83, 96
BspT104I	TTCGAA	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	203, 204
BssMI	GATC	2 cut(s)	12, 88
Bst2UI	CCWGG	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	179
BstKTI	GATC	2 cut(s)	15, 91
BstMBI	GATC	2 cut(s)	12, 88
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	2 cut(s)	41, 175
CviKI_1	RGCY	2 cut(s)	41, 175
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	14, 90
DpnII	GATC	2 cut(s)	12, 88
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	77
FaiI	YATR	4 cut(s)	75, 105, 215, 217
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	215
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	12, 88
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	20, 37, 175, 190
MalI	GATC	2 cut(s)	14, 90
MboI	GATC	2 cut(s)	12, 88
MboII	GAAGA	2 cut(s)	22, 121
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	66, 116, 126
MnlI	CCTC	4 cut(s)	31, 41, 65, 75
MseI	TTAA	1 cut(s)	161
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	2 cut(s)	12, 88
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	2 cut(s)	90, 211
NspV	TTCGAA	1 cut(s)	179
PasI	CCCWGGG	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	90, 211
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	12, 88
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	3 cut(s)	52, 86, 177
SfuI	TTCGAA	1 cut(s)	179
SgeI	CNNG	6 cut(s)	19, 36, 56, 70, 86, 202
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	203
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.