Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002340.1

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

87288 .. 89279

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002340.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggttgacatggtgaaagacttgggaagaagggagaacgacggacgtcgttcgttttgcttgagttcggcaactgcgcacaagcacgaacttaagggcgaccgcttcgaggagggcctcaccgaagccgttgtgcgcttcactgatacattcgagcgcttcaccaacgccgtcaagcacttcaccaagtccatttccttcgacaaatccctaaacaagcatgatatcatgggaagcaaggcccacgcctcagtgctccccaaacagggttttagggttcagggcccaggcagcctaggcgctggggggtgggtctccgccgcgattaatgtcaaatcggtggagctgggcggttggggtttcgacggccacctaggcggcctaaactggcgattgggtgcctgtgcttttgggcggattggcctgtgtggttctgccatcagatttggttttgatttggattcttttcggcaacgacggaggtccgatcctcaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

9.71

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	49
Acc16I	TGCGCA	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	323
AciI	CCGC	6 cut(s)	103, 318, 321, 351, 378, 415
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	46
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	109, 265, 266
AflII	CTTAAG	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	482
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	6 cut(s)	115, 240, 283, 367, 379, 421
ApaI	GGGCCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	291
AseI	ATTAAT	1 cut(s)	327
AspA2I	CCTAGG	2 cut(s)	295, 373
AspLEI	GCGC	4 cut(s)	79, 138, 159, 302
AspS9I	GGNCC	5 cut(s)	115, 241, 283, 284, 483
AsuHPI	GGTGA	4 cut(s)	25, 112, 154, 175
AvaII	GGWCC	1 cut(s)	483
AvrII	CCTAGG	2 cut(s)	295, 373
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	3 cut(s)	113, 155, 382
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	296, 374
BfoI	RGCGCY	2 cut(s)	160, 303
BfrI	CTTAAG	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	292, 321, 379
BlnI	CCTAGG	2 cut(s)	295, 373
BlsI	GCNGC	3 cut(s)	293, 322, 380
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	5 cut(s)	115, 241, 283, 284, 483
BmiI	GGNNCC	2 cut(s)	285, 400
BmrFI	CCNGG	1 cut(s)	288
BoxI	GACNNNNGTC	2 cut(s)	45, 481
BpuEI	CTTGAG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	286, 295, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 265, 266
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	286, 295, 373
BseLI	CCNNNNNNNGG	3 cut(s)	109, 265, 266
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	303
BseYI	CCCAGC	2 cut(s)	302, 346
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	6 cut(s)	117, 242, 285, 369, 381, 423
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	3 cut(s)	109, 265, 266
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	6 cut(s)	117, 242, 285, 369, 381, 423
Bso31I	GGTCTC	1 cut(s)	319
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	258, 287
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	6 cut(s)	103, 318, 321, 351, 378, 415
BspANI	GGCC	6 cut(s)	117, 242, 285, 369, 381, 423
BspCNI	CTCAG	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	285, 400
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	286, 295, 373
BssMI	GATC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	295, 373
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	2 cut(s)	160, 303
BstHHI	GCGC	4 cut(s)	79, 138, 159, 302
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	487
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 297, 375
BstNI	CCWGG	1 cut(s)	288
BstPAI	GACNNNNGTC	2 cut(s)	45, 481
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	303
BsuRI	GGCC	6 cut(s)	117, 242, 285, 369, 381, 423
BtsIMutI	CAGTG	2 cut(s)	141, 258
CfoI	GCGC	4 cut(s)	79, 138, 159, 302
Cfr13I	GGNCC	5 cut(s)	115, 241, 283, 284, 483
CviAII	CATG	3 cut(s)	10, 221, 229
CviJI	RGCY	9 cut(s)	117, 128, 242, 285, 294, 346, 369, 381, 423
CviKI_1	RGCY	9 cut(s)	117, 128, 242, 285, 294, 346, 369, 381, 423
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	367
EciI	GGCGGA	2 cut(s)	307, 430
Eco130I	CCWWGG	2 cut(s)	295, 373
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	483
Eco47III	AGCGCT	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	115, 283
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	295, 373
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	295, 373
FaeI	CATG	3 cut(s)	13, 224, 232
FaiI	YATR	3 cut(s)	11, 222, 230
FatI	CATG	3 cut(s)	9, 220, 228
Fnu4HI	GCNGC	3 cut(s)	292, 321, 379
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	292, 321, 379
FspBI	CTAG	2 cut(s)	296, 374
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	4 cut(s)	78, 137, 158, 301
GluI	GCNGC	3 cut(s)	292, 321, 379
GsaI	CCCAGC	2 cut(s)	306, 350
HaeII	RGCGCY	2 cut(s)	160, 303
HaeIII	GGCC	6 cut(s)	117, 242, 285, 369, 381, 423
HhaI	GCGC	4 cut(s)	79, 138, 159, 302
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	13, 224, 232
Hin6I	GCGC	4 cut(s)	77, 136, 157, 300
HinP1I	GCGC	4 cut(s)	77, 136, 157, 300
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	461
HphI	GGTGA	4 cut(s)	25, 112, 154, 175
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	443, 487
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	4 cut(s)	44, 51, 368, 480
HpyAV	CCTTC	2 cut(s)	24, 208
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 297, 375
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	46
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	3 cut(s)	13, 224, 232
HspAI	GCGC	4 cut(s)	77, 136, 157, 300
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	2 cut(s)	261, 343
LpnPI	CCDG	9 cut(s)	251, 266, 273, 288, 300, 332, 373, 415, 437
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	296, 374
MaeII	ACGT	1 cut(s)	46
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	258, 287
MnlI	CCTC	6 cut(s)	103, 106, 128, 259, 474, 501
MseI	TTAA	2 cut(s)	93, 327
MspCI	CTTAAG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	291, 297, 375
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	13, 224, 232
NlaIV	GGNNCC	2 cut(s)	285, 400
NsbI	TGCGCA	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	293, 322, 380
PshAI	GACNNNNGTC	2 cut(s)	45, 481
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	2 cut(s)	302, 346
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	285, 400
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	5 cut(s)	115, 241, 283, 284, 483
SaqAI	TTAA	2 cut(s)	93, 327
SatI	GCNGC	3 cut(s)	292, 321, 379
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	5 cut(s)	115, 241, 283, 284, 483
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	258, 287
SetI	ASST	4 cut(s)	49, 348, 375, 485
SinI	GGWCC	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	61, 92
SmoI	CTYRAG	2 cut(s)	61, 92
SsiI	CCGC	6 cut(s)	103, 318, 321, 351, 378, 415
SspMI	CTAG	2 cut(s)	296, 374
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	295, 373
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	4 cut(s)	108, 153, 201, 363
TauI	GCSGC	2 cut(s)	323, 381
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	93, 327
Tru9I	TTAA	2 cut(s)	93, 327
TscAI	CASTG	2 cut(s)	148, 258
TseI	GCWGC	1 cut(s)	291
TspGWI	ACGGA	2 cut(s)	57, 493
TspRI	CASTG	2 cut(s)	148, 258
Vha464I	CTTAAG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	483
VspI	ATTAAT	1 cut(s)	327
XmaJI	CCTAGG	2 cut(s)	295, 373
XspI	CTAG	2 cut(s)	296, 374
ZraI	GACGTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.