Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

62915642 .. 62918944

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG399200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCCAAGCTCGACCTCCACTGCGCTGCCACCGAGCCCAATAAGCTCCAGGGAGGCCGCTTTGAGGAGGGCATCACTGACTCCATCGAGCGCTTCAACGACGCCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGTATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGGGAAACATTCTGTACCAGTTTCCATCTCTACGGCGCATAGCTTCTAGGAAGATGAGAATATGTCCAGAGTTTGTTGGAAGAGCTGATAATTTTTTTAAGGAGAAACGGCAATTCAGAAAAACTAGTATTGCTAAGAGAGCAATGGTTGTTGGACTTGGTGGACTCAAAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAGGATCCTATAGTTGCACAAGTTGGCTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.59

Weight (kDa)

9.86

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	401, 414
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	4 cut(s)	64, 199, 200, 403
AgsI	TTSAA	1 cut(s)	97
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	10, 46, 242, 284
AluI	AGCT	4 cut(s)	10, 46, 242, 284
AlwI	GGATC	2 cut(s)	401, 414
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	3 cut(s)	55, 174, 394
ApeKI	GCWGC	2 cut(s)	26, 168
AspLEI	GCGC	3 cut(s)	26, 93, 237
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	39, 114
BbvI	GCAGC	2 cut(s)	13, 180
BccI	CCATC	3 cut(s)	92, 134, 232
BceAI	ACGGC	3 cut(s)	89, 248, 323
BciT130I	CCWGG	1 cut(s)	50
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	2 cut(s)	246, 324
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	3 cut(s)	27, 58, 169
BlsI	GCNGC	3 cut(s)	28, 59, 170
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 199, 200, 403
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	4 cut(s)	64, 199, 200, 403
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	13, 180
BshFI	GGCC	3 cut(s)	57, 176, 396
BslI	CCNNNNNNNGG	4 cut(s)	64, 199, 200, 403
BsnI	GGCC	3 cut(s)	57, 176, 396
Bsp1286I	GDGCHC	2 cut(s)	39, 114
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	3 cut(s)	57, 176, 396
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	401, 414
BspQI	GCTCTTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	333, 389
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	3 cut(s)	26, 93, 237
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 338
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	13, 180
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	57, 176, 396
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 75
CfoI	GCGC	3 cut(s)	26, 93, 237
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	333, 389
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	39, 114
Eco47III	AGCGCT	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	39, 114
FaeI	CATG	1 cut(s)	166
FaiI	YATR	6 cut(s)	156, 164, 239, 262, 413, 452
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	27, 58, 169
FriOI	GRGCYC	2 cut(s)	39, 114
Fsp4HI	GCNGC	3 cut(s)	27, 58, 169
FspBI	CTAG	2 cut(s)	246, 324
GlaI	GCGC	3 cut(s)	25, 92, 236
GluI	GCNGC	3 cut(s)	27, 58, 169
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	57, 176, 396
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	3 cut(s)	26, 93, 237
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	3 cut(s)	24, 91, 235
HinP1I	GCGC	3 cut(s)	24, 91, 235
HinfI	GANTC	3 cut(s)	80, 122, 363
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	317, 390
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	362
Hpy99I	CGWCG	2 cut(s)	104, 110
HpyAV	CCTTC	2 cut(s)	124, 142
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 338
HpyF3I	CTNAG	2 cut(s)	333, 389
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	24, 91, 235
Kzo9I	GATC	1 cut(s)	406
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	51, 195
LpnPI	CCDG	5 cut(s)	35, 62, 185, 230, 279
Lsp1109I	GCAGC	2 cut(s)	13, 180
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	246, 324
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	262, 291
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	39, 114
MluCI	AATT	2 cut(s)	289, 311
MlyI	GAGTC	3 cut(s)	74, 131, 357
MmeI	TCCRAC	2 cut(s)	256, 331
MnlI	CCTC	8 cut(s)	26, 47, 58, 61, 155, 193, 386, 468
MseI	TTAA	2 cut(s)	297, 401
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	43, 338
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	28, 59, 170
PleI	GAGTC	3 cut(s)	74, 130, 357
PpsI	GAGTC	3 cut(s)	74, 130, 357
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
PsuI	RGATCY	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	297, 401
SatI	GCNGC	3 cut(s)	27, 58, 169
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	3 cut(s)	74, 131, 357
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	39, 114
SetI	ASST	5 cut(s)	12, 18, 48, 244, 286
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	411
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	2 cut(s)	289, 311
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	246, 324
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	48
TaqI	TCGA	4 cut(s)	12, 87, 108, 135
TasI	AATT	2 cut(s)	289, 311
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	297, 401
Tru9I	TTAA	2 cut(s)	297, 401
TscAI	CASTG	2 cut(s)	26, 82
TseI	GCWGC	2 cut(s)	26, 168
TspRI	CASTG	2 cut(s)	26, 82
Tth111I	GACNNNGTC	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	401
XspI	CTAG	2 cut(s)	246, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.