Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

31079302 .. 31082505

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACTCCACCTTCGACGATGGCCGCCGCTTCATTCCGGACTTGTCCATTTCAGCTCGCTCAATCTCACTCCGAAACCAAAACCAAAACCCCAATCCCCCCCCCTCCCAAATTGACCAAACCGCTAGAGTTTTCCGGCGGCCATCCCAGTATGAGTTCCAGATCTGCGAGCCGGAGACCCACATGGCATGTCTTCCTCCAGAAGTTTCCAAACTACTTCCAATTTTCCAAAGAATCGGCTTCTTTCTTTCTGAGGTGGACTTATGTTTTGAGTGCCAAAAATGTTTGACTGTGGCTACACGTCACAGTATCCGGGAGGGCAGAGAGACAAGTTTATTAATATTGGAAGATAAGAATATGTACAGAGTTTGTGGAAGAGCTGATAATTTTTTTAAGGAGAAATGGCAATTCAGAAACACTAGTATTGCTAAGAGAGCAATGGTTGTTGGACTTGGTGAACTGCCAGTATTTGGGGTTCTCATTCTGAGAGGTCTATTAAAATATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.5

Weight (kDa)

8.82

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	4 cut(s)	25, 28, 123, 139
AcoI	YGGCCR	2 cut(s)	22, 140
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	299
AhlI	ACTAGT	1 cut(s)	419
AjiI	CACGTC	1 cut(s)	302
AluBI	AGCT	2 cut(s)	56, 380
AluI	AGCT	2 cut(s)	56, 380
Alw26I	GTCTC	2 cut(s)	170, 320
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	2 cut(s)	22, 140
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 251, 283
AseI	ATTAAT	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	185
BccI	CCATC	2 cut(s)	14, 151
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	170, 320
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	2 cut(s)	126, 420
BfuI	GTATCC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	25, 28, 140
BlsI	GCNGC	3 cut(s)	26, 29, 141
Bme1390I	CCNGG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	148, 464
Bse3DI	GCAATG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	37
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	243, 476
BseNI	ACTGG	2 cut(s)	148, 464
BshFI	GGCC	2 cut(s)	24, 142
BsiSI	CCGG	4 cut(s)	38, 136, 173, 313
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	170, 320
BsnI	GGCC	2 cut(s)	24, 142
Bso31I	GGTCTC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	4 cut(s)	25, 28, 123, 139
BspANI	GGCC	2 cut(s)	24, 142
BspCNI	CTCAG	2 cut(s)	244, 477
BspEI	TCCGGA	1 cut(s)	37
BspQI	GCTCTTC	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	148, 464
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	292, 308
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	58, 170
BstDEI	CTNAG	3 cut(s)	252, 429, 485
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	170, 320
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	24, 142
BtrI	CACGTC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	58, 170
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	184, 189
CviJI	RGCY	7 cut(s)	24, 56, 142, 172, 240, 296, 380
CviKI_1	RGCY	7 cut(s)	24, 56, 142, 172, 240, 296, 380
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	252, 429, 485
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	22, 140
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	170
FaeI	CATG	2 cut(s)	187, 192
FaiI	YATR	6 cut(s)	153, 185, 190, 265, 359, 504
FatI	CATG	2 cut(s)	183, 188
Fnu4HI	GCNGC	3 cut(s)	25, 28, 140
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	25, 28, 140
FspBI	CTAG	2 cut(s)	126, 420
GluI	GCNGC	3 cut(s)	25, 28, 140
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	24, 142
HapII	CCGG	4 cut(s)	38, 136, 173, 313
Hin1II	CATG	2 cut(s)	187, 192
HinfI	GANTC	2 cut(s)	5, 234
HpaII	CCGG	4 cut(s)	38, 136, 173, 313
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	259, 458
Hpy188I	TCNGA	4 cut(s)	74, 253, 413, 486
Hpy188III	TCNNGA	3 cut(s)	38, 160, 200
Hpy8I	GTNNAC	2 cut(s)	259, 458
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	292, 308
HpyCH4IV	ACGT	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	3 cut(s)	252, 429, 485
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	187, 192
Kpn2I	TCCGGA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	51, 149, 161, 173, 186, 213, 326, 477
MaeI	CTAG	2 cut(s)	126, 420
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	185, 359, 387
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	4 cut(s)	111, 222, 385, 407
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	5 cut(s)	115, 207, 247, 310, 482
MroI	TCCGGA	1 cut(s)	37
MseI	TTAA	3 cut(s)	338, 393, 497
MspI	CCGG	4 cut(s)	38, 136, 173, 313
MspR9I	CCNGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	187, 192
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	26, 29, 141
PshBI	ATTAAT	1 cut(s)	338
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	338, 393, 497
SatI	GCNGC	3 cut(s)	25, 28, 140
Sau3AI	GATC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	6 cut(s)	14, 58, 258, 304, 382, 493
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	4 cut(s)	111, 222, 385, 407
SsiI	CCGC	4 cut(s)	25, 28, 123, 139
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	2 cut(s)	126, 420
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	292, 308
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	15
TasI	AATT	4 cut(s)	111, 222, 385, 407
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	3 cut(s)	27, 30, 142
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	3 cut(s)	338, 393, 497
Tru9I	TTAA	3 cut(s)	338, 393, 497
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	338
XceI	RCATGY	1 cut(s)	192
XspI	CTAG	2 cut(s)	126, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.