Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

5533740 .. 5534188

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCTAAGCTCGACCTCCACTGCGCTGCCACCGAGCCCAAGCTCCAGGGAGGCCGCTTCGAGGAGGGCATCACCGACGCCATCGAGCTCTTCACCGACGCCGTCGAGCCCTTCACTGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGTCTTTAGCTTCCAGCTCAATTTCTCAACTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

5.15

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	55
AcyI	GRCGYC	2 cut(s)	78, 99
AfiI	CCNNNNNNNGG	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	10, 43, 88, 206, 213
AluI	AGCT	5 cut(s)	10, 43, 88, 206, 213
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	2 cut(s)	52, 171
ApeKI	GCWGC	2 cut(s)	26, 165
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	64, 85
BanII	GRGCYC	3 cut(s)	39, 90, 111
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	13, 177
BccI	CCATC	2 cut(s)	89, 131
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	47
BisI	GCNGC	3 cut(s)	27, 55, 166
BlsI	GCNGC	3 cut(s)	28, 56, 167
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	6
BsaHI	GRCGYC	2 cut(s)	78, 99
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	13, 177
BshFI	GGCC	2 cut(s)	54, 173
BsiHKAI	GWGCWC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	54, 173
Bsp1286I	GDGCHC	3 cut(s)	39, 90, 111
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	54, 173
BspCNI	CTCAG	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	46
BssNI	GRCGYC	2 cut(s)	78, 99
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	78, 99
BstDEI	CTNAG	2 cut(s)	6, 117
BstHHI	GCGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	13, 177
BsuRI	GGCC	2 cut(s)	54, 173
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 114
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	2 cut(s)	86, 107
CviAII	CATG	2 cut(s)	152, 160
DdeI	CTNAG	2 cut(s)	6, 117
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	3 cut(s)	39, 90, 111
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	45
EcoT38I	GRGCYC	3 cut(s)	39, 90, 111
FaeI	CATG	2 cut(s)	155, 163
FaiI	YATR	3 cut(s)	153, 161, 232
FatI	CATG	2 cut(s)	151, 159
Fnu4HI	GCNGC	3 cut(s)	27, 55, 166
FriOI	GRGCYC	3 cut(s)	39, 90, 111
Fsp4HI	GCNGC	3 cut(s)	27, 55, 166
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	27, 55, 166
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	54, 173
HgaI	GACGC	2 cut(s)	86, 107
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	2 cut(s)	78, 99
Hin1II	CATG	2 cut(s)	155, 163
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	2 cut(s)	64, 85
Hpy99I	CGWCG	3 cut(s)	80, 101, 107
HpyAV	CCTTC	2 cut(s)	121, 139
HpyCH4III	ACNGT	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	6, 117
Hsp92I	GRCGYC	2 cut(s)	78, 99
Hsp92II	CATG	2 cut(s)	155, 163
HspAI	GCGC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	48, 192
LpnPI	CCDG	3 cut(s)	32, 59, 223
Lsp1109I	GCAGC	2 cut(s)	13, 177
LweI	GCATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	3 cut(s)	39, 90, 111
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	26, 44, 55, 58, 152, 190
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NlaIII	CATG	2 cut(s)	155, 163
PciSI	GCTCTTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	28, 56, 167
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	3 cut(s)	27, 55, 166
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	39, 90, 111
SetI	ASST	6 cut(s)	12, 18, 45, 90, 208, 215
SfaNI	GCATC	1 cut(s)	78
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	5 cut(s)	12, 60, 84, 105, 132
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	57
TscAI	CASTG	2 cut(s)	26, 121
TseI	GCWGC	2 cut(s)	26, 165
TspRI	CASTG	2 cut(s)	26, 121
Tth111I	GACNNNGTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.