Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

32120962 .. 32134697

Gene Structure 13736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATTGGAGGAGTTCAATTGGGACCGTTAGCGGCTTGCATTGTGGTTTTAGTTCCTATAGGCATGGTTGGTTATCATCTTAGCTACACCAAGATGCTATTCTTTAACGACACCCTCTCCATCACACTTGCCTTCGTCGTCACCACCGTCTCCTCTCGTCGTCGTTTTCTAGAACCGTTGCGATTCTCGCCTCTCCCACCTTCACGACATCATCGCCTAGTTAATAAAAACTCAAAAAAAGGTCGATGCACCGCCACAAGAGGCGGTAAGACTACGCTATATAAGAGAACTTGGAGGATTCAACTATCTGCCCCCATTGTAGAATCAAAGACAGACCACTTTATATATGGCAAACCTGAAGGATATCCATGCCCAAGCTCGACCTCCTCTCGCGCTGCCACCGAGCCCAAGGAGGCCAAGCTCTTGGGAGGCCGCTTCAAGGAGGGCATCACCGATGCCATCGAGCGCTTCACCGACACCGTCAAGCCCTTCACCGAGTTCATCTCCTTCGACAAAGCCTTCTACAAGCATGACATCATGGGCAACAAGGCCCACGCCTCAATGCTCCCCAAACAGGTCCTTCACTTTAGTTTCTCCATTTTCAGTTCTCTCAATTTCTCAATTTCTAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

10.08

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	4 cut(s)	32, 252, 264, 433
AcuI	CTGAAG	1 cut(s)	378
AfeI	AGCGCT	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	439, 574
AgsI	TTSAA	3 cut(s)	17, 302, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	84, 378, 421
AluI	AGCT	3 cut(s)	84, 378, 421
Alw26I	GTCTC	1 cut(s)	154
Aor51HI	AGCGCT	1 cut(s)	467
AoxI	GGCC	3 cut(s)	414, 430, 549
ApeKI	GCWGC	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	395, 468
AspS9I	GGNCC	3 cut(s)	23, 550, 577
AsuHPI	GGTGA	4 cut(s)	133, 442, 463, 484
AvaII	GGWCC	2 cut(s)	23, 577
BanII	GRGCYC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	2 cut(s)	128, 467
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	170, 218, 627
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	3 cut(s)	33, 396, 433
BlsI	GCNGC	3 cut(s)	34, 397, 434
Bme18I	GGWCC	2 cut(s)	23, 577
BmgT120I	GGNCC	3 cut(s)	23, 550, 577
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	4 cut(s)	84, 236, 445, 456
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 574
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	439, 574
BseRI	GAGGAG	3 cut(s)	24, 142, 376
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	416, 432, 551
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	439, 574
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	416, 432, 551
Bsp1286I	GDGCHC	1 cut(s)	408
BspACI	CCGC	4 cut(s)	32, 252, 264, 433
BspANI	GGCC	3 cut(s)	416, 432, 551
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	4 cut(s)	27, 148, 177, 481
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	395, 468
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	416, 432, 551
BtgZI	GCGATG	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	395, 468
Cfr13I	GGNCC	3 cut(s)	23, 550, 577
CviAII	CATG	4 cut(s)	64, 369, 530, 538
DdeI	CTNAG	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	23, 577
Eco47III	AGCGCT	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	4 cut(s)	67, 372, 533, 541
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	4 cut(s)	63, 368, 529, 537
Fnu4HI	GCNGC	3 cut(s)	33, 396, 433
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	33, 396, 433
FspBI	CTAG	3 cut(s)	170, 218, 627
GlaI	GCGC	2 cut(s)	394, 467
GluI	GCNGC	3 cut(s)	33, 396, 433
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	3 cut(s)	416, 432, 551
HhaI	GCGC	2 cut(s)	395, 468
Hin1II	CATG	4 cut(s)	67, 372, 533, 541
Hin6I	GCGC	2 cut(s)	393, 466
HinP1I	GCGC	2 cut(s)	393, 466
HinfI	GANTC	3 cut(s)	183, 298, 323
HphI	GGTGA	4 cut(s)	133, 442, 463, 484
Hpy188III	TCNNGA	2 cut(s)	170, 204
Hpy99I	CGWCG	3 cut(s)	140, 162, 165
HpyAV	CCTTC	7 cut(s)	142, 210, 353, 499, 517, 529, 590
HpyCH4III	ACNGT	4 cut(s)	27, 148, 177, 481
HpyCH4V	TGCA	2 cut(s)	39, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	67, 372, 533, 541
HspAI	GCGC	2 cut(s)	393, 466
LmnI	GCTCC	1 cut(s)	570
LpnPI	CCDG	2 cut(s)	369, 560
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	4 cut(s)	84, 236, 445, 456
MaeI	CTAG	3 cut(s)	170, 218, 627
MaeIII	GTNAC	1 cut(s)	139
MfeI	CAATTG	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	17, 613, 621
MseI	TTAA	2 cut(s)	105, 222
MslI	CAYNNNNRTG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	67, 372, 533, 541
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	183, 298, 323
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	34, 397, 434
PpuMI	RGGWCCY	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	3 cut(s)	23, 550, 577
PspPPI	RGGWCCY	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	105, 222
SatI	GCNGC	3 cut(s)	33, 396, 433
Sau96I	GGNCC	3 cut(s)	23, 550, 577
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	8 cut(s)	86, 202, 244, 358, 380, 386, 423, 579
SfaNI	GCATC	4 cut(s)	84, 236, 445, 456
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	23, 577
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	17, 613, 621
SsiI	CCGC	4 cut(s)	32, 252, 264, 433
SspMI	CTAG	3 cut(s)	170, 218, 627
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	27, 148, 177, 481
TaqI	TCGA	4 cut(s)	244, 380, 462, 510
TasI	AATT	3 cut(s)	17, 613, 621
TauI	GCSGC	2 cut(s)	35, 435
TfiI	GAWTC	3 cut(s)	183, 298, 323
Tru1I	TTAA	2 cut(s)	105, 222
Tru9I	TTAA	2 cut(s)	105, 222
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	490
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	23, 577
XbaI	TCTAGA	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XspI	CTAG	3 cut(s)	170, 218, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.