Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

53193253 .. 53195034

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAATTGCTATTACAGGTTTTGATATGTCAAAATGAGGCTGAAAAATGCTTAATTGAGACATCTATTAGTTCCCTTTGTATAAGCCTCAAGTTAAGGGAAGGGGCAGAAAGTGCACTCAATCTGACATCAATTCCATCTTCTCATTCATGGAATCAACAAGTTTTCAGTCTTAGCAGGCCTGAAGATTGGGAGAAAGTCCCTGATCCTAAGAAGTATTTTGTCCAATTTTTTGGAACAGAAGAGATCAGAGAACACCATCCATTAGTTGAAAAGGCAGCTTATCAGCAAGTCAGTAGTGAAGAATCTGGAGTTGATTTTGGCAATCCAAAGCCAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

5.02

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	281, 341
AluI	AGCT	2 cut(s)	281, 341
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	145, 267
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	205, 246
BspANI	GGCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	200
BssMI	GATC	2 cut(s)	205, 246
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	173, 210
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	208, 249
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	205, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	179
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	6 cut(s)	41, 87, 181, 281, 334, 341
CviKI_1	RGCY	6 cut(s)	41, 87, 181, 281, 334, 341
DdeI	CTNAG	2 cut(s)	173, 210
DpnI	GATC	2 cut(s)	207, 248
DpnII	GATC	2 cut(s)	205, 246
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	204
FaeI	CATG	1 cut(s)	153
FaiI	YATR	3 cut(s)	28, 83, 151
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	2 cut(s)	154, 305
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	126, 251
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	173, 210
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	205, 246
LpnPI	CCDG	5 cut(s)	2, 163, 195, 216, 294
Lsp1109I	GCAGC	1 cut(s)	290
MalI	GATC	2 cut(s)	207, 248
MboI	GATC	2 cut(s)	205, 246
MboII	GAAGA	4 cut(s)	132, 197, 254, 314
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	4 cut(s)	5, 54, 132, 227
MnlI	CCTC	2 cut(s)	31, 98
MseI	TTAA	2 cut(s)	53, 95
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	205, 246
NlaIII	CATG	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	154, 305
PkrI	GCNGC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	53, 95
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	205, 246
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	3 cut(s)	21, 283, 343
SgeI	CNNG	9 cut(s)	29, 103, 162, 173, 190, 194, 215, 302, 321
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	5, 54, 132, 227
SseBI	AGGCCT	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	181
TasI	AATT	4 cut(s)	5, 54, 132, 227
TfiI	GAWTC	2 cut(s)	154, 305
Tru1I	TTAA	2 cut(s)	53, 95
Tru9I	TTAA	2 cut(s)	53, 95
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	138
VneI	GTGCAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.