Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Reverse (-)

753305 .. 757060

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGCGGGCCTATGTTCTCATGGAAGCACTCAACAAGTCCGCTTCCAAGCTCCAATCACACATTGTGCCTAAAGCCCAATTGATATTGGTAATTAGAATCATTAGAATGGCAATAGAAGAGGGCCGTGTTTCGAATGAATGTTCAAATGTTGATGAGACCTTCTTTGCCTGCAAATATATATTAGAGTTCACGGGAAACATTCTGTACCAGTTTCCATCTCTACGGCGCATAGCTTCTAGCAAGATAAGAATATGTACAGAGTTTGTGGAAGAGCTGATAATTTTTTTAAGGAGAAATGGCAATTCAGGTCCTTATTCTATTTGCCTTTTCCAATTGTTCCGTGAGTTCCATCTGCAATTAAATTTAGCAATTAAGTTTTCTCTTTGCAGAAACACTAGTATTGCTAAGAGAGCAATGGTTGTTGGACTTGGTGAACTGCCAGTATTTGGGGTTCTCATTCTGAGAGGTCTATTAAAATATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

9.71

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	2 cut(s)	7, 42
AcsI	RAATTY	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	209, 259
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	147
AhlI	ACTAGT	1 cut(s)	398
AluBI	AGCT	3 cut(s)	52, 236, 277
AluI	AGCT	3 cut(s)	52, 236, 277
Alw26I	GTCTC	1 cut(s)	152
AoxI	GGCC	2 cut(s)	9, 124
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	9, 124, 311
AsuHPI	GGTGA	1 cut(s)	446
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	311
BccI	CCATC	2 cut(s)	226, 360
BceAI	ACGGC	2 cut(s)	111, 242
BcoDI	GTCTC	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	240, 399
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	9, 124, 311
Bpu14I	TTCGAA	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	211, 443
Bse3DI	GCAATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	211, 443
BshFI	GGCC	2 cut(s)	11, 126
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	11, 126
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	257
BspACI	CCGC	2 cut(s)	7, 42
BspANI	GGCC	2 cut(s)	11, 126
BspCNI	CTCAG	1 cut(s)	456
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	211, 443
Bst6I	CTCTTC	2 cut(s)	114, 267
BstAUI	TGTACA	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	9, 172
BstDEI	CTNAG	2 cut(s)	408, 464
BstHHI	GCGC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	11, 126
Cac8I	GCNNGC	2 cut(s)	9, 172
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	9, 124, 311
Csp6I	GTAC	2 cut(s)	208, 258
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	6 cut(s)	11, 52, 77, 126, 236, 277
CviKI_1	RGCY	6 cut(s)	11, 52, 77, 126, 236, 277
CviQI	GTAC	2 cut(s)	208, 258
DdeI	CTNAG	2 cut(s)	408, 464
DraIII	CACNNNGTG	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	114, 267
EarI	CTCTTC	2 cut(s)	114, 267
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	311
FaeI	CATG	1 cut(s)	25
FaiI	YATR	7 cut(s)	15, 23, 180, 182, 233, 256, 483
FatI	CATG	1 cut(s)	21
FspBI	CTAG	2 cut(s)	240, 399
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	11, 126
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	192, 437
Hpy188I	TCNGA	1 cut(s)	465
Hpy8I	GTNNAC	2 cut(s)	192, 437
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	174, 358, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	2 cut(s)	408, 464
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	184, 224, 294, 456
MaeI	CTAG	2 cut(s)	240, 399
MboII	GAAGA	2 cut(s)	131, 284
MfeI	CAATTG	2 cut(s)	80, 335
MluCI	AATT	8 cut(s)	80, 93, 282, 304, 335, 359, 364, 372
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	2 cut(s)	115, 461
MseI	TTAA	4 cut(s)	290, 362, 375, 476
MslI	CAYNNNNRTG	1 cut(s)	107
MunI	CAATTG	2 cut(s)	80, 335
MwoI	GCNNNNNNNGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
PspPI	GGNCC	3 cut(s)	9, 124, 311
PspPPI	RGGWCCY	1 cut(s)	311
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
RsaI	GTAC	2 cut(s)	209, 259
RsaNI	GTAC	2 cut(s)	208, 258
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	290, 362, 375, 476
Sau96I	GGNCC	3 cut(s)	9, 124, 311
SetI	ASST	6 cut(s)	54, 164, 238, 279, 313, 472
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	8 cut(s)	80, 93, 282, 304, 335, 359, 364, 372
SsiI	CCGC	2 cut(s)	7, 42
SspMI	CTAG	2 cut(s)	240, 399
TaqI	TCGA	1 cut(s)	134
TasI	AATT	8 cut(s)	80, 93, 282, 304, 335, 359, 364, 372
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	4 cut(s)	290, 362, 375, 476
Tru9I	TTAA	4 cut(s)	290, 362, 375, 476
TspDTI	ATGAA	2 cut(s)	17, 153
TspGWI	ACGGA	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	364
XspI	CTAG	2 cut(s)	240, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.