Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003484

Physical Location & Seq

Genomic Coordinates Forward (+)

57177124 .. 57179926

Gene Structure 2803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCCAAGCTCAACCTCCACTGCGCTGCCACCGAGCCCAAGGAGGCCAAGCTCCAGGGCTGCCGCTTCGAGGAGGGCATCACCGACGCCATCGAGCGCTTCACCGACGTCGTCGAGCCCTTCACCGAGTCCATCTCCTTCGACAAAGCCCTCTACAAGCATGACATCATGGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGTTAAGGAAAGAGGCAGAAAGTGCATTGAATCTGACAACAATTCCATCTTCTCATTCATGGAATCAACAAGTTTTCAGTATTAGCAGGCTTGGAGATTGGGAGAAAGTCCCTGATCCTAAGAAGTACTTCGTCCAATTTTCCGGTACAGAAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004056 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016840 GO:0016842 GO:0019752 GO:0042450 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 map00220 map00250 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

ASL_C2 Lyase_1

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

5.79

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003484)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340321 RchiOBHm_Chr2g0120411 RchiOBHm_Chr6g0244231
rosa_laevigata	RLG00000027546 RLG00000029011
rosa_multiflora	Rmu_sc0000511.1_g000007 Rmu_sc0001163.1_g000031 Rmu_sc0001293.1_g000027 Rmu_sc0001918.1_g000005 Rmu_sc0002340.1_g000018 Rmu_sc0002723.1_g000039 Rmu_sc0002912.1_g000004 Rmu_sc0004354.1_g000020 Rmu_sc0004823.1_g000008 Rmu_sc0013073.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434090 Rroxscaffold_1G00036420 Rroxscaffold_3G00244710 Rroxscaffold_7G00191520 Rroxscaffold_7G00193720 Rroxscaffold_7G00209290
rosa_rugosa	Rorug04G0111500
rosa_samantha	Rh1BG032900 Rh1BG154700 Rh1DG011500 Rh1DG191500 Rh2AG281800 Rh3AG071700 Rh4AG092000 Rh4AG256800 Rh5AG240500 Rh5DG011000 Rh5DG399200 Rh6BG181100 Rh7DG426200 Rh7DG464900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	87, 108
AfaI	GTAC	2 cut(s)	332, 352
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	10, 52
AluI	AGCT	2 cut(s)	10, 52
AlwI	GGATC	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	2 cut(s)	45, 180
ApeKI	GCWGC	3 cut(s)	26, 60, 174
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	26, 99
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	73, 94, 115
BanII	GRGCYC	2 cut(s)	39, 120
BbvI	GCAGC	3 cut(s)	13, 47, 186
BccI	CCATC	3 cut(s)	98, 140, 259
BciT130I	CCWGG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	4 cut(s)	27, 61, 64, 175
BlsI	GCNGC	4 cut(s)	28, 62, 65, 176
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	87, 108
BsaJI	CCNNGG	2 cut(s)	39, 55
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	39, 55
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	13, 47, 186
BshFI	GGCC	2 cut(s)	47, 182
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	47, 182
Bsp1286I	GDGCHC	2 cut(s)	39, 120
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	47, 182
BspPI	GGATC	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	39, 55
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	2 cut(s)	87, 108
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	2 cut(s)	87, 108
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	26, 99
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	13, 47, 186
BsuRI	GGCC	2 cut(s)	47, 182
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	2 cut(s)	26, 99
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	331, 351
CviAII	CATG	3 cut(s)	161, 169, 264
CviJI	RGCY	9 cut(s)	10, 37, 47, 52, 60, 118, 149, 182, 295
CviKI_1	RGCY	9 cut(s)	10, 37, 47, 52, 60, 118, 149, 182, 295
CviQI	GTAC	2 cut(s)	331, 351
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	39, 120
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	39, 120
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	164, 172, 267
FaiI	YATR	3 cut(s)	162, 170, 265
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	160, 168, 263
Fnu4HI	GCNGC	4 cut(s)	27, 61, 64, 175
FriOI	GRGCYC	2 cut(s)	39, 120
Fsp4HI	GCNGC	4 cut(s)	27, 61, 64, 175
GlaI	GCGC	2 cut(s)	25, 98
GluI	GCNGC	4 cut(s)	27, 61, 64, 175
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	47, 182
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	26, 99
Hin1I	GRCGYC	2 cut(s)	87, 108
Hin1II	CATG	3 cut(s)	164, 172, 267
Hin6I	GCGC	2 cut(s)	24, 97
HinP1I	GCGC	2 cut(s)	24, 97
HinfI	GANTC	3 cut(s)	128, 235, 268
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	73, 94, 115
Hpy188I	TCNGA	1 cut(s)	240
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	2 cut(s)	130, 148
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	2 cut(s)	87, 108
Hsp92II	CATG	3 cut(s)	164, 172, 267
HspAI	GCGC	2 cut(s)	24, 97
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	57, 201
LpnPI	CCDG	5 cut(s)	41, 68, 277, 330, 361
Lsp1109I	GCAGC	3 cut(s)	13, 47, 186
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	108
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	39, 120
MluCI	AATT	2 cut(s)	246, 341
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	26, 37, 64, 67, 161, 199, 211
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	209
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	164, 172, 267
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	235, 268
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	28, 62, 65, 176
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	332, 352
RsaNI	GTAC	2 cut(s)	331, 351
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	27, 61, 64, 175
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	39, 120
SetI	ASST	4 cut(s)	12, 18, 54, 111
SfaNI	GCATC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	246, 341
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	69, 93, 114, 141
TasI	AATT	2 cut(s)	246, 341
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	235, 268
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	3 cut(s)	26, 60, 174
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.