Rmu_sc0001918.1_g000005

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001918.1
OG0003484
Physical Location & Seq
Reverse (-)
16981 .. 18254
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001918.1_g000005.1.cds

Sequence Viewer

Length: 489 bp
atgtatgatataggtttgaatcctgaccgcaccatgtacattgctttgattgatggattcttgaaagaaaataacgtggataaggccctcaggatcaaagaagagatggtcactcgaggagttaagttgtgcggtgtcacatataatgtgatttttgcagggatctataaaatagcgtccggccaccatctcaccacaccgctacccccaatcgatccagcatccaaatcctacctaagcccaagcctcaccatcgacatgcatagactccggcctccacctgcgatcctccgaaccacgatgccactgtcgctacctccttttgaatcccggctactgccttgccacaccaccatcaccgctcaacccagtggactacggagatcaaaacccaaaagcaacttccccaaccgacgccggaagaccaccgtaagagccatcgccggagacgaggatctgcggttctttgttcttcaatttctggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

162

Amino Acids

18.26

Weight (kDa)

10.01

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 5 cut(s) 28, 132, 200, 360, 460
AclWI GGATC 5 cut(s) 101, 170, 209, 280, 462
AcoI YGGCCR 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 4 cut(s) 19, 64, 326, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 5 cut(s) 101, 170, 209, 280, 462
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 3 cut(s) 84, 181, 272
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 3 cut(s) 184, 241, 349
AvaI CYCGRG 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 6 cut(s) 47, 100, 195, 260, 362, 446
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 230, 291
BmuI ACTGGG 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 132
BshFI GGCC 3 cut(s) 86, 183, 274
BshVI ATCGAT 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 5 cut(s) 180, 271, 331, 418, 444
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
BsnI GGCC 3 cut(s) 86, 183, 274
BsoBI CYCGRG 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 6 cut(s) 93, 162, 214, 285, 383, 454
BspACI CCGC 5 cut(s) 28, 132, 200, 360, 460
BspANI GGCC 3 cut(s) 86, 183, 274
BspCNI CTCAG 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 5 cut(s) 101, 170, 209, 280, 462
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 1 cut(s) 369
BssMI GATC 6 cut(s) 93, 162, 214, 285, 383, 454
BssNI GRCGYC 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 309, 430
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 89, 236
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 6 cut(s) 96, 165, 217, 288, 386, 457
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 6 cut(s) 93, 162, 214, 285, 383, 454
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 2 cut(s) 162, 454
BstYI RGATCY 2 cut(s) 162, 454
Bsu15I ATCGAT 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 3 cut(s) 86, 183, 274
BsuTUI ATCGAT 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 305, 376
BveI ACCTGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 2 cut(s) 165, 423
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 34, 259
CviJI RGCY 7 cut(s) 86, 183, 240, 246, 274, 334, 437
CviKI_1 RGCY 7 cut(s) 86, 183, 240, 246, 274, 334, 437
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 89, 236
DpnI GATC 6 cut(s) 95, 164, 216, 287, 385, 456
DpnII GATC 6 cut(s) 93, 162, 214, 285, 383, 454
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 2 cut(s) 37, 262
FaiI YATR 8 cut(s) 6, 11, 35, 142, 144, 168, 260, 264
FatI CATG 2 cut(s) 33, 258
FokI GGATG 1 cut(s) 208
HaeIII GGCC 3 cut(s) 86, 183, 274
HapII CCGG 5 cut(s) 180, 271, 331, 418, 444
HgaI GACGC 2 cut(s) 165, 423
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 2 cut(s) 37, 262
HinfI GANTC 4 cut(s) 19, 57, 267, 326
HpaII CCGG 5 cut(s) 180, 271, 331, 418, 444
HphI GGTGA 3 cut(s) 184, 241, 349
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 3 cut(s) 23, 61, 91
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 417
HpyCH4III ACNGT 2 cut(s) 309, 430
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 158, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 89, 236
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 2 cut(s) 37, 262
Kzo9I GATC 6 cut(s) 93, 162, 214, 285, 383, 454
LweI GCATC 2 cut(s) 230, 291
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 109, 136
MalI GATC 6 cut(s) 95, 164, 216, 287, 385, 456
MbiI CCGCTC 1 cut(s) 362
MboI GATC 6 cut(s) 93, 162, 214, 285, 383, 454
MboII GAAGA 3 cut(s) 113, 433, 464
MflI RGATCY 2 cut(s) 162, 454
MluCI AATT 1 cut(s) 476
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 7 cut(s) 98, 110, 257, 285, 299, 327, 445
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 5 cut(s) 180, 271, 331, 418, 444
MspR9I CCNGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 331
NdeII GATC 6 cut(s) 93, 162, 214, 285, 383, 454
NlaIII CATG 2 cut(s) 37, 262
NmuCI GTSAC 2 cut(s) 109, 136
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PfeI GAWTC 3 cut(s) 19, 57, 326
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 85
PspXI VCTCGAGB 1 cut(s) 114
PsuI RGATCY 2 cut(s) 162, 454
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 6 cut(s) 93, 162, 214, 285, 383, 454
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 331
SetI ASST 5 cut(s) 16, 78, 237, 283, 319
SfaNI GCATC 2 cut(s) 230, 291
Sfr274I CTCGAG 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 1 cut(s) 476
SsiI CCGC 5 cut(s) 28, 132, 200, 360, 460
StyD4I CCNGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 309, 430
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 115, 213, 255
TasI AATT 1 cut(s) 476
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 3 cut(s) 19, 57, 326
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 312, 376
TseFI GTSAC 2 cut(s) 109, 136
Tsp45I GTSAC 2 cut(s) 109, 136
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 312, 376
XceI RCATGY 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.