Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Reverse (-)

4276108 .. 4277191

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28800

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTCTTCATGATAAAAGGTCTGTCAAATTCCCATGATGGTATTTTTGGTGGTGGATTGTGTTTCTTACAGAAATTTATAATTTTGCAAATGTACAGGCATGCAAATGTGTCATTGGAGATGCTGTTGAAGCTAGTAGCAGTCTTTGGCCCAGTTATACGGTCTACCATTTCAGCACCTCCAGCTGTCGGAGTCAATCTTCAGGCAGAGCAAAGGCTGGAGTGCTGCAACCAATGCTCTGTACACCTGCAAAAGATCCAGAAAATTCTCCCAGTCTTTGTAAGGTTAGATCCTGACACCAGTGATGTGATAGTAGACTTCTATACTAATAGTTCTATACAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

115

Amino Acids

12.81

Weight (kDa)

7.7

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Katanin_con80	PF13925	30 - 95	3.6e-17	con80 domain of Katanin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccI	GTMKAC	2 cut(s)	164, 315
AclWI	GGATC	2 cut(s)	250, 284
AcsI	RAATTY	3 cut(s)	28, 74, 264
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	95, 243
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	2 cut(s)	133, 185
AluI	AGCT	2 cut(s)	133, 185
AlwI	GGATC	2 cut(s)	250, 284
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	3 cut(s)	28, 74, 264
AspS9I	GGNCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	149
BmrI	ACTGGG	2 cut(s)	146, 266
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	2 cut(s)	146, 266
BpmI	CTGGAG	2 cut(s)	165, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	152, 272, 300
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	3 cut(s)	152, 272, 300
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	150
Bsp1407I	TGTACA	2 cut(s)	93, 241
Bsp143I	GATC	2 cut(s)	255, 289
BspANI	GGCC	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	250, 284
BsrGI	TGTACA	2 cut(s)	93, 241
BsrI	ACTGG	3 cut(s)	152, 272, 300
BssMI	GATC	2 cut(s)	255, 289
Bst4CI	ACNGT	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstAUI	TGTACA	2 cut(s)	93, 241
BstC8I	GCNNGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	258, 292
BstMBI	GATC	2 cut(s)	255, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 182, 234
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	255, 289
BstYI	RGATCY	2 cut(s)	255, 289
BsuRI	GGCC	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	94, 242
CviAII	CATG	3 cut(s)	10, 35, 101
CviJI	RGCY	4 cut(s)	133, 150, 185, 217
CviKI_1	RGCY	4 cut(s)	133, 150, 185, 217
CviQI	GTAC	2 cut(s)	94, 242
DpnI	GATC	2 cut(s)	257, 291
DpnII	GATC	2 cut(s)	255, 289
Eco57I	CTGAAG	1 cut(s)	185
FaeI	CATG	3 cut(s)	13, 38, 104
FaiI	YATR	7 cut(s)	11, 36, 80, 102, 158, 324, 338
FatI	CATG	3 cut(s)	9, 34, 100
FblI	GTMKAC	2 cut(s)	164, 315
Fnu4HI	GCNGC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	226
GsuI	CTGGAG	2 cut(s)	165, 239
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	13, 38, 104
HinfI	GANTC	1 cut(s)	192
Hpy166II	GTNNAC	3 cut(s)	165, 244, 316
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	10, 259, 293
Hpy8I	GTNNAC	3 cut(s)	165, 244, 316
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	88, 104, 228, 250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 182, 234
Hsp92II	CATG	3 cut(s)	13, 38, 104
Kzo9I	GATC	2 cut(s)	255, 289
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	134
MalI	GATC	2 cut(s)	257, 291
MboI	GATC	2 cut(s)	255, 289
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	2 cut(s)	255, 289
MluCI	AATT	5 cut(s)	28, 74, 81, 264, 341
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	130, 182, 234
NdeII	GATC	2 cut(s)	255, 289
NlaIII	CATG	3 cut(s)	13, 38, 104
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PagI	TCATGA	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	255, 289
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	95, 243
RsaNI	GTAC	2 cut(s)	94, 242
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	255, 289
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	201
SetI	ASST	6 cut(s)	22, 135, 181, 187, 249, 287
SfaNI	GCATC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	105
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	5 cut(s)	28, 74, 81, 264, 341
SspMI	CTAG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	162
TasI	AATT	5 cut(s)	28, 74, 81, 264, 341
TatI	WGTACW	2 cut(s)	93, 241
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	225
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	3 cut(s)	28, 74, 264
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	164, 315
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.