Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Reverse (-)

90088327 .. 90091153

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTGGTTGGATGGGGAAGAAGAAGAAGCAGCAGCTAGAGGAGAAGAAGGAGAAGTGATAGATTGTCCGAAAGAAGGGGGACGTGCTGGCAAGATGTGCTCTAGAATTGAATCTAATTCTTCAAGAGTCACAACGGATACTGTCTGTCAGAACTGCAAAAAGACTAGAGCTCAGGAATTTTGTGAGGCAAAGATTAAAGCAATATCAGTCTTGCCTGAGGAGCTTGAAGACGGTAGTCATCCCTTCCTAGAGTCATCTTCGGCATTACTTAATATTGGTATACTAGAGCTCAAGAATTTTGTGAGGACAGTCTTGCCTGAGGAGCTTCAAGACAGGAGAAGTGATCCCTGCAGTATTCCTGTTCAAGCATTGCGCAAATTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.26

Weight (kDa)

4.84

Isoelectric Point (pI)

64.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	283
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	3 cut(s)	179, 298, 380
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	5 cut(s)	113, 126, 230, 332, 368
AjiI	CACGTC	1 cut(s)	86
AluBI	AGCT	5 cut(s)	38, 173, 226, 292, 328
AluI	AGCT	5 cut(s)	38, 173, 226, 292, 328
Alw21I	GWGCWC	3 cut(s)	104, 175, 294
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	32, 35
ApoI	RAATTY	3 cut(s)	179, 298, 380
AspLEI	GCGC	1 cut(s)	378
AxyI	CCTNAGG	2 cut(s)	219, 321
BanII	GRGCYC	2 cut(s)	175, 294
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	104, 175, 294
BbvI	GCAGC	2 cut(s)	44, 47
BccI	CCATC	1 cut(s)	8
BciVI	GTATCC	1 cut(s)	133
BfaI	CTAG	5 cut(s)	39, 105, 168, 251, 287
BfmI	CTRYAG	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
BmgBI	CACGTC	1 cut(s)	86
BoxI	GACNNNNGTC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse21I	CCTNAGG	2 cut(s)	219, 321
Bse3DI	GCAATG	1 cut(s)	371
BseGI	GGATG	2 cut(s)	19, 241
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	188, 210, 312
BseRI	GAGGAG	3 cut(s)	57, 236, 338
BseXI	GCAGC	2 cut(s)	44, 47
BsiHKAI	GWGCWC	3 cut(s)	104, 175, 294
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	104, 175, 294
Bsp143I	GATC	1 cut(s)	346
BspCNI	CTCAG	3 cut(s)	187, 211, 313
BspMAI	CTGCAG	1 cut(s)	356
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	371
BssMI	GATC	1 cut(s)	346
BssNAI	GTATAC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	145, 236, 313
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	174, 219, 321
BstF5I	GGATG	2 cut(s)	19, 241
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 223, 325
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	44, 47
BstV2I	GAAGAC	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	284
Bsu36I	CCTNAGG	2 cut(s)	219, 321
BsuI	GTATCC	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	19, 241
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	378
CviJI	RGCY	6 cut(s)	5, 38, 173, 226, 292, 328
CviKI_1	RGCY	6 cut(s)	5, 38, 173, 226, 292, 328
DdeI	CTNAG	3 cut(s)	174, 219, 321
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Ecl136II	GAGCTC	2 cut(s)	173, 292
Eco24I	GRGCYC	2 cut(s)	175, 294
Eco53kI	GAGCTC	2 cut(s)	173, 292
Eco81I	CCTNAGG	2 cut(s)	219, 321
EcoICRI	GAGCTC	2 cut(s)	173, 292
EcoT38I	GRGCYC	2 cut(s)	175, 294
FaiI	YATR	1 cut(s)	284
FaqI	GGGAC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	2 cut(s)	26, 228
FriOI	GRGCYC	2 cut(s)	175, 294
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	5 cut(s)	39, 105, 168, 251, 287
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	33, 36
HhaI	GCGC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	113, 129, 254
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	72, 153
Hpy188III	TCNNGA	6 cut(s)	105, 126, 176, 295, 332, 387
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	44, 71, 256
HpyCH4III	ACNGT	3 cut(s)	145, 236, 313
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	159, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 223, 325
HpyF3I	CTNAG	3 cut(s)	174, 219, 321
HpySE526I	ACGT	1 cut(s)	85
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	223, 325
LpnPI	CCDG	7 cut(s)	75, 161, 231, 322, 333, 364, 375
Lsp1109I	GCAGC	2 cut(s)	44, 47
MaeI	CTAG	5 cut(s)	39, 105, 168, 251, 287
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	7 cut(s)	32, 35, 38, 59, 114, 242, 252
MhlI	GDGCHC	3 cut(s)	104, 175, 294
MluCI	AATT	5 cut(s)	108, 118, 179, 298, 380
MlyI	GAGTC	2 cut(s)	138, 263
MnlI	CCTC	5 cut(s)	35, 181, 214, 300, 316
MseI	TTAA	2 cut(s)	198, 273
MwoI	GCNNNNNNNGC	3 cut(s)	99, 223, 325
NdeII	GATC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	130
NsbI	TGCGCA	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	2 cut(s)	137, 262
PpsI	GAGTC	2 cut(s)	137, 262
PshAI	GACNNNNGTC	1 cut(s)	237
Psp124BI	GAGCTC	2 cut(s)	175, 294
PstI	CTGCAG	1 cut(s)	356
SacI	GAGCTC	2 cut(s)	175, 294
SaqAI	TTAA	2 cut(s)	198, 273
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	138, 263
SduI	GDGCHC	3 cut(s)	104, 175, 294
SetI	ASST	6 cut(s)	40, 88, 175, 228, 294, 330
SfcI	CTRYAG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	108, 118, 179, 298, 380
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	5 cut(s)	39, 105, 168, 251, 287
SstI	GAGCTC	2 cut(s)	175, 294
TaaI	ACNGT	3 cut(s)	145, 236, 313
TaiI	ACGT	1 cut(s)	88
TasI	AATT	5 cut(s)	108, 118, 179, 298, 380
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	198, 273
Tru9I	TTAA	2 cut(s)	198, 273
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	32, 35
Tsp45I	GTSAC	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	152
XapI	RAATTY	3 cut(s)	179, 298, 380
XbaI	TCTAGA	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	5 cut(s)	39, 105, 168, 251, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.