Rh5CG449600

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001097
Physical Location & Seq
Reverse (-)
62616245 .. 62639982
23738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG449600.1

Sequence Viewer

Length: 603 bp
ATGCCTACAGGAGTACGCGCAATTACTTTCCACCCTGATGAGAGGACAATATTTTCTGGATTGGATGACAGTTTGAAGGAAACCAGTGCTAAGAAGCAGATTCCTATAGCAGGGTTGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCCCTGGTTTCACCTAGCATCGTACCTCGAAGCAGTCCCAATTCAAAAGATTCAGCTAACTTTGGAAGAGAATCTGTTGTATTTCCGAAAAGGCGTGCTATGTTGCTCAGACCAGCACATGTGCGAAGCCCATCAAATAGCAAAGTTGACGTGGAGAAGCTACCGTTGGCCGTTGAATCTGAAACTTTTAGCAGTATGACGAGTAAATTGGTTGGTGTAGTGGGTCTCAGTTCTCAAATCAAAACTGTATCAGAAGATAGTGATAGAGAGGCCTGTAAGGAAAAACATTCTGTAATCAAGAGTGCAGAAGAGAAGTTTGAAGCAATATTATCACTGAAGAGGCCCTCTGATCAGGAATCCAGAAATAGATCGCTCAATAACAGCAAGGAAATGAGCCCCGTTAAAGTTGTCAATGGAGTTGCCGTTGTACCAGGAAGGACTCACCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Katanin_con80 WD40

Protein Analysis

200

Amino Acids

21.74

Weight (kDa)

9.77

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 3 cut(s) 15, 174, 579
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 76, 195, 326, 470
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 3 cut(s) 153, 580, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 206, 310
AluI AGCT 2 cut(s) 206, 310
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 3 cut(s) 318, 420, 491
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 153, 584
BanII GRGCYC 1 cut(s) 548
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 305, 557
BciT130I CCWGG 3 cut(s) 155, 582, 597
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 6, 105
Bme1390I CCNGG 3 cut(s) 155, 582, 597
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 492
BmrFI CCNGG 3 cut(s) 155, 582, 597
BmsI GCATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 153, 595
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 3 cut(s) 155, 582, 597
BseDI CCNNGG 2 cut(s) 153, 595
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 271, 391
BseNI ACTGG 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 320, 422, 493
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 3 cut(s) 320, 422, 493
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 2 cut(s) 499, 518
BspANI GGCC 3 cut(s) 320, 422, 493
BspCNI CTCAG 2 cut(s) 270, 390
BspFNI CGCG 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 153, 595
BssMI GATC 2 cut(s) 499, 518
Bst2UI CCWGG 3 cut(s) 155, 582, 597
Bst4CI ACNGT 4 cut(s) 71, 142, 315, 397
Bst6I CTCTTC 3 cut(s) 211, 453, 482
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 90, 257, 377
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 502, 521
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 499, 518
BstNI CCWGG 3 cut(s) 155, 582, 597
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 153, 580, 595
BstSFI CTRYAG 2 cut(s) 6, 105
BstUI CGCG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 320, 422, 493
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 91, 482
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 14, 173, 578
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 206, 279, 310, 320, 422, 493, 546
CviKI_1 RGCY 7 cut(s) 206, 279, 310, 320, 422, 493, 546
CviQI GTAC 3 cut(s) 14, 173, 578
DdeI CTNAG 3 cut(s) 90, 257, 377
DpnI GATC 2 cut(s) 501, 520
DpnII GATC 2 cut(s) 499, 518
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 3 cut(s) 211, 453, 482
EarI CTCTTC 3 cut(s) 211, 453, 482
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 3 cut(s) 153, 580, 595
EcoT38I GRGCYC 1 cut(s) 548
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 107, 251, 270, 347
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 499
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 548
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 19
HaeIII GGCC 3 cut(s) 320, 422, 493
HhaI GCGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 6 cut(s) 100, 200, 221, 326, 506, 589
HphI GGTGA 2 cut(s) 153, 584
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 5 cut(s) 237, 260, 331, 403, 499
Hpy188III TCNNGA 4 cut(s) 57, 448, 503, 510
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 70, 579
HpyCH4III ACNGT 4 cut(s) 71, 142, 315, 397
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 90, 257, 377
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 499, 518
LmnI GCTCC 1 cut(s) 123
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 300
MalI GATC 2 cut(s) 501, 520
MboI GATC 2 cut(s) 499, 518
MboII GAAGA 4 cut(s) 228, 416, 470, 499
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 3 cut(s) 21, 190, 356
MlyI GAGTC 1 cut(s) 583
MnlI CCTC 5 cut(s) 36, 186, 412, 483, 505
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 36
MspR9I CCNGG 3 cut(s) 155, 582, 597
MvaI CCWGG 3 cut(s) 155, 582, 597
MvnI CGCG 1 cut(s) 18
NdeII GATC 2 cut(s) 499, 518
NlaIII CATG 1 cut(s) 272
NspI RCATGY 1 cut(s) 272
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 268
PfeI GAWTC 5 cut(s) 100, 200, 221, 326, 506
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PscI ACATGT 1 cut(s) 268
Psp6I CCWGG 3 cut(s) 153, 580, 595
PspGI CCWGG 3 cut(s) 153, 580, 595
PspPI GGNCC 1 cut(s) 492
RsaI GTAC 3 cut(s) 15, 174, 579
RsaNI GTAC 3 cut(s) 14, 173, 578
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 552
Sau3AI GATC 2 cut(s) 499, 518
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 155, 582, 597
SduI GDGCHC 1 cut(s) 548
SetI ASST 5 cut(s) 166, 178, 208, 303, 312
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 2 cut(s) 6, 105
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 3 cut(s) 21, 190, 356
SseBI AGGCCT 1 cut(s) 422
SspI AATATT 2 cut(s) 51, 477
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 153, 580, 595
TaaI ACNGT 4 cut(s) 71, 142, 315, 397
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 178
TasI AATT 3 cut(s) 21, 190, 356
TfiI GAWTC 5 cut(s) 100, 200, 221, 326, 506
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 91, 489
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 2 cut(s) 91, 489
XagI CCTNNNNNAGG 1 cut(s) 108
XceI RCATGY 1 cut(s) 272
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.