Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Forward (+)

32530718 .. 32532505

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATAAGGTAGAGACTGGTATAAGGGGTCCAGGTTTGCACTGTACGTCTCTTGATTATGACACAAAGGAAATAAAGAACATATATTTTGATTCTGTAGCTGGAAAGCCAGTTACCTCACAGAGAATTAATTCTTCAAAAGTTTTACCCCCATTGGATTTAAGGAAACCAGTGCTAAGAAGCAGATTCCTGCAGCAGGGTTGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCTCTGGTTTCGCCTAGCATCGTACGAAACAGTCCCAATGCAAAAGATTCAGCTAACTCTGGAAGAGAATCTGTTGCATTTCCGAAAAGGCGTGCTATGTTGCTCAGACCAGCTCATGTGCGAAGCCCATCAAATAGCAAAGTTGACGTGGAGAAGCCACCGTTGGCCGTTGAATCTGAAACTTTCAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

143

Amino Acids

16.5

Weight (kDa)

9.71

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	401
AfaI	GTAC	2 cut(s)	46, 260
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	138, 409
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	3 cut(s)	101, 289, 349
AluI	AGCT	3 cut(s)	101, 289, 349
Alw26I	GTCTC	2 cut(s)	8, 54
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	193
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	372
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	8, 54
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	96, 191
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	22, 110, 170
BseBI	CCWGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	22, 110, 170
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	403
BsiWI	CGTACG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	8, 54
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	22, 110, 170
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	44, 228, 268, 398
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	176, 340
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstMAI	GTCTC	2 cut(s)	8, 54
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	96, 191
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	40, 177
Cac8I	GCNNGC	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	45, 259
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	7 cut(s)	101, 109, 289, 349, 362, 393, 403
CviKI_1	RGCY	7 cut(s)	101, 109, 289, 349, 362, 393, 403
CviQI	GTAC	2 cut(s)	45, 259
DdeI	CTNAG	2 cut(s)	176, 340
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	355
FaiI	YATR	7 cut(s)	23, 60, 83, 85, 334, 353, 430
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	5 cut(s)	92, 186, 283, 304, 409
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	320, 343, 414
Hpy188III	TCNNGA	2 cut(s)	53, 296
Hpy8I	GTNNAC	1 cut(s)	381
HpyCH4III	ACNGT	4 cut(s)	44, 228, 268, 398
HpyCH4IV	ACGT	2 cut(s)	47, 383
HpyCH4V	TGCA	4 cut(s)	40, 193, 277, 313
HpyF3I	CTNAG	2 cut(s)	176, 340
HpySE526I	ACGT	2 cut(s)	47, 383
Hsp92II	CATG	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	47, 383
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	126, 311
MluCI	AATT	2 cut(s)	126, 130
MnlI	CCTC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	129, 161
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	92, 186, 283, 304, 409
Pfl23II	CGTACG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	195
RsaI	GTAC	2 cut(s)	46, 260
RsaNI	GTAC	2 cut(s)	45, 259
SaqAI	TTAA	2 cut(s)	129, 161
SatI	GCNGC	1 cut(s)	194
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	8 cut(s)	12, 37, 50, 103, 119, 291, 351, 386
SfaNI	GCATC	1 cut(s)	263
SfcI	CTRYAG	2 cut(s)	96, 191
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	126, 130
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	44, 228, 268, 398
TaiI	ACGT	2 cut(s)	50, 386
TasI	AATT	2 cut(s)	126, 130
TfiI	GAWTC	5 cut(s)	92, 186, 283, 304, 409
Tru1I	TTAA	2 cut(s)	129, 161
Tru9I	TTAA	2 cut(s)	129, 161
TscAI	CASTG	2 cut(s)	47, 177
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	47, 177
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.