Rroxscaffold_1G00069170

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
90146247 .. 90157740
11494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069170.1

Sequence Viewer

Length: 267 bp
ATGGATATTCTGACATTAGATCTCTTTTCGTGTTTGCTGCCTGTGCTTCTGGGCTTACTTGATAGAAAAATTGATAGGCATGCAAATGTGTCATTGGGGATGCTGTTGAAGCTAGTAGCAGTCTTTGGCCCAGTGATACGATCTACCATTTCAGCACCTCCAGTGGTCGGAGTCAATCTTCAGGCAGAGCAAAGGAATTACCACACACTCTTCTTTGAGATGAATAATACACACTCTCCATTCTCTGCGTATCTTGGAGCAAAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

7.96

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Katanin_con80 PF13925 2 - 66 9.7e-17 con80 domain of Katanin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 24
BfaI CTAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 19
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 131, 161
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 131, 161
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 19, 140
BspANI GGCC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 131, 161
BssMI GATC 2 cut(s) 19, 140
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 22, 143
BstMBI GATC 2 cut(s) 19, 140
BstMWI GCNNNNNNNGC 2 cut(s) 43, 109
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 138, 168
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 1 cut(s) 80
CviJI RGCY 3 cut(s) 54, 112, 129
CviKI_1 RGCY 3 cut(s) 54, 112, 129
DpnI GATC 2 cut(s) 21, 142
DpnII GATC 2 cut(s) 19, 140
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 164
FaeI CATG 1 cut(s) 83
FaiI YATR 1 cut(s) 81
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 12, 170
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 109
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 19, 140
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 35, 54, 144, 167, 174
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 113
MalI GATC 2 cut(s) 21, 142
MboI GATC 2 cut(s) 19, 140
MboII GAAGA 2 cut(s) 170, 202
MflI RGATCY 1 cut(s) 19
MluCI AATT 2 cut(s) 69, 196
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 43, 109
NdeII GATC 2 cut(s) 19, 140
NlaIII CATG 1 cut(s) 83
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 19, 140
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 180
SetI ASST 2 cut(s) 114, 160
SfaNI GCATC 1 cut(s) 90
SgeI CNNG 9 cut(s) 42, 53, 62, 71, 92, 125, 143, 173, 194
SmiMI CAYNNNNRTG 1 cut(s) 84
SphI GCATGC 1 cut(s) 83
Sse9I AATT 2 cut(s) 69, 196
SspMI CTAG 1 cut(s) 113
TasI AATT 2 cut(s) 69, 196
TscAI CASTG 2 cut(s) 138, 168
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 2 cut(s) 138, 168
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.