Rroxscaffold_1G00069150

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
90140402 .. 90141416
1015 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00069150.1

Sequence Viewer

Length: 549 bp
ATGTCTCCTGATTATGACACAAAGGAAATAAAGAACATATATGTTGATTCTGCAGGTGGAAAGCCAGTTACCTCACAGAGAATTAATTCTTCAAAAGTTTTACCCCCATTGGATTTAAAGGAAACCAGTGCTAAGAAGCAGATTCCTGCAGCAGGGTCGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCCCTAGTTGTGCCTAGCATCGTACCTCGAAGCAGTCCCAATGCAAAAGACTCAGCTAACTCTGGAAGAGAATCTGTTGCATTTTCAAAAACTAGGCGTGGTATGTTGCTCAGACCAGCTCATGTGCGAAGCCCATCAAATAGCAAAGTTGACGTGGAGAAGCTACCATTGGCCGTTGAATCTGAAACTTTCAGCAGTATGACTAGTAAATTTGATGGTGCAGTGGGTTTCAGTTCTCAAATCAAAACTGTATCAGAAGATAGTGATAGAGAGGCCTGTAAGGAAAAACATACTGCAATCAAGAGTGTAGAAGAGAAATATGAAGCAGTATTATCACTGAAGAGGCCCTCTGAATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

19.72

Weight (kDa)

9.45

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 93, 279, 371
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 248, 311, 355
AluI AGCT 3 cut(s) 248, 311, 355
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 3 cut(s) 363, 465, 536
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 334, 401
BceAI ACGGC 1 cut(s) 350
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 4 cut(s) 197, 207, 285, 396
BfmI CTRYAG 2 cut(s) 51, 147
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 537
BmsI GCATC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 65, 126
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 258, 316
BseNI ACTGG 2 cut(s) 65, 126
BseXI GCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 3 cut(s) 365, 467, 538
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 3 cut(s) 365, 467, 538
BspANI GGCC 3 cut(s) 365, 467, 538
BspCNI CTCAG 2 cut(s) 257, 315
BspMAI CTGCAG 2 cut(s) 55, 151
BspMI ACCTGC 1 cut(s) 44
BsrI ACTGG 2 cut(s) 65, 126
Bst4CI ACNGT 2 cut(s) 184, 442
Bst6I CTCTTC 3 cut(s) 253, 498, 527
BstDEI CTNAG 3 cut(s) 132, 244, 302
BstENI CCTNNNNNAGG 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 9
BstSFI CTRYAG 2 cut(s) 51, 147
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 3 cut(s) 365, 467, 538
BtrI CACGTC 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 133, 420, 527
BveI ACCTGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 215
CviAII CATG 1 cut(s) 314
CviJI RGCY 8 cut(s) 64, 248, 311, 324, 355, 365, 467, 538
CviKI_1 RGCY 8 cut(s) 64, 248, 311, 324, 355, 365, 467, 538
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 3 cut(s) 132, 244, 302
DraI TTTAAA 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 3 cut(s) 253, 498, 527
EarI CTCTTC 3 cut(s) 253, 498, 527
Eco147I AGGCCT 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 537
FaeI CATG 1 cut(s) 317
FaiI YATR 9 cut(s) 15, 38, 40, 42, 296, 315, 392, 483, 513
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 4 cut(s) 197, 207, 285, 396
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 3 cut(s) 365, 467, 538
Hin1II CATG 1 cut(s) 317
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 5 cut(s) 47, 142, 242, 263, 371
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 305, 376, 448, 544
Hpy188III TCNNGA 3 cut(s) 8, 255, 493
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 184, 442
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 6 cut(s) 53, 149, 236, 272, 413, 488
HpyF3I CTNAG 3 cut(s) 132, 244, 302
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 1 cut(s) 317
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 9 cut(s) 21, 39, 78, 138, 139, 159, 240, 321, 481
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 219
MaeI CTAG 4 cut(s) 197, 207, 285, 396
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 5 cut(s) 81, 270, 461, 515, 544
MluCI AATT 3 cut(s) 81, 85, 401
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 4 cut(s) 82, 228, 457, 528
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 2 cut(s) 84, 116
NlaIII CATG 1 cut(s) 317
PaqCI CACCTGC 1 cut(s) 44
PceI AGGCCT 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 47, 142, 263, 371
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 84
PspPI GGNCC 1 cut(s) 537
PstI CTGCAG 2 cut(s) 55, 151
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 84, 116
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 1 cut(s) 236
SetI ASST 7 cut(s) 58, 74, 220, 250, 313, 348, 357
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 2 cut(s) 51, 147
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 3 cut(s) 81, 85, 401
SseBI AGGCCT 1 cut(s) 467
SspMI CTAG 4 cut(s) 197, 207, 285, 396
StuI AGGCCT 1 cut(s) 467
TaaI ACNGT 2 cut(s) 184, 442
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 220
TasI AATT 3 cut(s) 81, 85, 401
TfiI GAWTC 4 cut(s) 47, 142, 263, 371
Tru1I TTAA 2 cut(s) 84, 116
Tru9I TTAA 2 cut(s) 84, 116
TscAI CASTG 3 cut(s) 133, 420, 534
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 189, 528
TspRI CASTG 3 cut(s) 133, 420, 534
VspI ATTAAT 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 150
XapI RAATTY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 4 cut(s) 197, 207, 285, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.