RLG00000031445

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001097
Physical Location & Seq
Reverse (-)
5205268 .. 5207867
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031445

Sequence Viewer

Length: 459 bp
ATGGATGAGGCATGGAAATGTGTCATTGGAGATGCTGTTGAAGCTAGTAGCAGTCTTTGGTCCAGCGATACGATCTACCATTTCAGCACCTCCAGAGGTCGGAGTCAATCTTCAGGCAGAGCAAAGGCTGGAATGCTGCAACCAATACTCTATACACCTGCAAAAGATCCAGAAAATTCTCCCAGTCTTTGTAAGACTAGAGCTCAGGCATTTTGTGAGGCAAAGATTAAAGCAATATCAGTCTTGCCTGAGGAGCTTGAAGACAGTAGTCATCCCTTCCTAGAGTCATCTTCGGCATTACTTAATATTGGTATACTAGAGCTCAAGAATTTTGTGAGGACAGTCTTTTGCCTGAGGAGCTTCAAGACAGGAGAAGTGATCCCTGCAGTATTCTCGTTCAGGCATTGCGCAAATTCTCCTGATTTTGATGGTCTGCTGCGGGAGATTGCCGTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.66

Weight (kDa)

5.91

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc16I TGCGCA 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 313
AciI CCGC 1 cut(s) 439
AclWI GGATC 2 cut(s) 161, 373
AcsI RAATTY 3 cut(s) 175, 328, 412
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 3 cut(s) 41, 260, 364
AluBI AGCT 5 cut(s) 44, 203, 256, 322, 360
AluI AGCT 5 cut(s) 44, 203, 256, 322, 360
Alw21I GWGCWC 2 cut(s) 205, 324
AlwI GGATC 2 cut(s) 161, 373
ApeKI GCWGC 2 cut(s) 136, 436
ApoI RAATTY 3 cut(s) 175, 328, 412
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 60
AvaII GGWCC 1 cut(s) 60
AxyI CCTNAGG 2 cut(s) 249, 353
BanII GRGCYC 2 cut(s) 205, 324
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 205, 324
BbvI GCAGC 2 cut(s) 123, 423
BccI CCATC 1 cut(s) 422
BceAI ACGGC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BfaI CTAG 4 cut(s) 45, 198, 281, 317
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 137, 437
BlsI GCNGC 2 cut(s) 138, 438
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 183
Bse21I CCTNAGG 2 cut(s) 249, 353
Bse3DI GCAATG 1 cut(s) 403
BseGI GGATG 2 cut(s) 10, 271
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 3 cut(s) 218, 240, 344
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 266, 370
BseXI GCAGC 2 cut(s) 123, 423
BsiHKAI GWGCWC 2 cut(s) 205, 324
BslI CCNNNNNNNGG 1 cut(s) 99
BsmI GAATGC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 205, 324
Bsp143I GATC 3 cut(s) 72, 166, 378
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 3 cut(s) 217, 241, 345
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 161, 373
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 183
BssMI GATC 3 cut(s) 72, 166, 378
BssNAI GTATAC 1 cut(s) 314
Bst1107I GTATAC 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 266, 343
BstDEI CTNAG 3 cut(s) 204, 249, 353
BstF5I GGATG 2 cut(s) 10, 271
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 3 cut(s) 75, 169, 381
BstMBI GATC 3 cut(s) 72, 166, 378
BstMWI GCNNNNNNNGC 3 cut(s) 41, 253, 357
BstPAI GACNNNNGTC 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 123, 423
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 314
Bsu36I CCTNAGG 2 cut(s) 249, 353
BtsCI GGATG 2 cut(s) 10, 271
BveI ACCTGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 1 cut(s) 12
CviJI RGCY 6 cut(s) 44, 128, 203, 256, 322, 360
CviKI_1 RGCY 6 cut(s) 44, 128, 203, 256, 322, 360
DdeI CTNAG 3 cut(s) 204, 249, 353
DpnI GATC 3 cut(s) 74, 168, 380
DpnII GATC 3 cut(s) 72, 166, 378
Ecl136II GAGCTC 2 cut(s) 203, 322
Eco24I GRGCYC 2 cut(s) 205, 324
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 2 cut(s) 203, 322
Eco57I CTGAAG 1 cut(s) 96
Eco81I CCTNAGG 2 cut(s) 249, 353
EcoICRI GAGCTC 2 cut(s) 203, 322
EcoT38I GRGCYC 2 cut(s) 205, 324
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 153, 314
FatI CATG 1 cut(s) 11
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 137, 437
FokI GGATG 2 cut(s) 17, 258
FriOI GRGCYC 2 cut(s) 205, 324
Fsp4HI GCNGC 2 cut(s) 137, 437
FspBI CTAG 4 cut(s) 45, 198, 281, 317
FspI TGCGCA 1 cut(s) 409
GlaI GCGC 1 cut(s) 409
GluI GCNGC 2 cut(s) 137, 437
GsuI CTGGAG 1 cut(s) 76
HhaI GCGC 1 cut(s) 410
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 2 cut(s) 103, 284
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 5 cut(s) 93, 170, 325, 364, 419
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 266, 343
HpyCH4V TGCA 3 cut(s) 139, 161, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 253, 357
HpyF3I CTNAG 3 cut(s) 204, 249, 353
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 3 cut(s) 72, 166, 378
LmnI GCTCC 2 cut(s) 253, 357
Lsp1109I GCAGC 2 cut(s) 123, 423
LweI GCATC 1 cut(s) 22
MaeI CTAG 4 cut(s) 45, 198, 281, 317
MalI GATC 3 cut(s) 74, 168, 380
MboI GATC 3 cut(s) 72, 166, 378
MboII GAAGA 3 cut(s) 102, 272, 282
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 205, 324
MluCI AATT 3 cut(s) 175, 328, 412
MlyI GAGTC 2 cut(s) 112, 293
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 6 cut(s) 89, 100, 211, 244, 330, 348
MseI TTAA 3 cut(s) 228, 303, 457
MslI CAYNNNNRTG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 41, 253, 357
NdeII GATC 3 cut(s) 72, 166, 378
NlaIII CATG 1 cut(s) 15
NsbI TGCGCA 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 166
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 138, 438
PleI GAGTC 2 cut(s) 111, 292
PpsI GAGTC 2 cut(s) 111, 292
PshAI GACNNNNGTC 1 cut(s) 267
Psp124BI GAGCTC 2 cut(s) 205, 324
PspPI GGNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 16
SacI GAGCTC 2 cut(s) 205, 324
SaqAI TTAA 3 cut(s) 228, 303, 457
SatI GCNGC 2 cut(s) 137, 437
Sau3AI GATC 3 cut(s) 72, 166, 378
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 2 cut(s) 112, 293
SduI GDGCHC 2 cut(s) 205, 324
SetI ASST 8 cut(s) 46, 92, 100, 160, 205, 258, 324, 362
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 175, 328, 412
SsiI CCGC 1 cut(s) 439
SspI AATATT 1 cut(s) 307
SspMI CTAG 4 cut(s) 45, 198, 281, 317
SstI GAGCTC 2 cut(s) 205, 324
TaaI ACNGT 2 cut(s) 266, 343
TasI AATT 3 cut(s) 175, 328, 412
Tru1I TTAA 3 cut(s) 228, 303, 457
Tru9I TTAA 3 cut(s) 228, 303, 457
TseI GCWGC 2 cut(s) 136, 436
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 3 cut(s) 175, 328, 412
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 4 cut(s) 45, 198, 281, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.