Rh4DG027200

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
4834933 .. 4836273
1341 bp
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UTR
Exon/CDS
Intron
Rh4DG027200.1

Sequence Viewer

Length: 282 bp
ATGACGAGTAAATTGGATGGTGCAGTGGGTCTCAGTTCTCAAATCAAAACTGTATCAGAAGATAGTGATAGAGAGGCCTGTAAGGAAAAACATTCTGCAATCAAGAGTGTAGAAGAGAAATTTGAAGCAGTATTATCACTGAAGAGGCCCTCTGATCAGGAAACCAGAAATAGATCGCTCAATAACAGCAAGGAAATGAGCCCCGTTAAAGTTGTCAATGGAGTTGCCGTTGTACCAGGAAGGACTCGCACCCTGGTTGAGAGATTTGAAAGTATTGTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.25

Weight (kDa)

8.85

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 2 cut(s) 125, 269
AjnI CCWGG 2 cut(s) 235, 252
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 2 cut(s) 75, 146
ApoI RAATTY 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 203
BccI CCATC 1 cut(s) 11
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 237, 254
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 237, 254
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 237, 254
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
BseBI CCWGG 2 cut(s) 237, 254
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 77, 148
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 77, 148
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 154, 173
BspANI GGCC 2 cut(s) 77, 148
BspCNI CTCAG 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 154, 173
Bst2UI CCWGG 2 cut(s) 237, 254
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 108, 137
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 157, 176
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 154, 173
BstNI CCWGG 2 cut(s) 237, 254
BstSCI CCNGG 2 cut(s) 235, 252
BsuRI GGCC 2 cut(s) 77, 148
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 137
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 233
CviJI RGCY 3 cut(s) 77, 148, 201
CviKI_1 RGCY 3 cut(s) 77, 148, 201
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 156, 175
DpnII GATC 2 cut(s) 154, 173
Eam1104I CTCTTC 2 cut(s) 108, 137
EarI CTCTTC 2 cut(s) 108, 137
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 235, 252
EcoT38I GRGCYC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 154
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 203
HaeIII GGCC 2 cut(s) 77, 148
HinfI GANTC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 58, 154
Hpy188III TCNNGA 2 cut(s) 103, 158
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 23, 98
HpyF3I CTNAG 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 173
LpnPI CCDG 7 cut(s) 91, 143, 178, 222, 239, 249, 266
MalI GATC 2 cut(s) 156, 175
MboI GATC 2 cut(s) 154, 173
MboII GAAGA 3 cut(s) 71, 125, 154
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 11, 119
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 3 cut(s) 67, 138, 160
MseI TTAA 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 237, 254
MvaI CCWGG 2 cut(s) 237, 254
NdeII GATC 2 cut(s) 154, 173
PceI AGGCCT 1 cut(s) 77
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 235, 252
PspGI CCWGG 2 cut(s) 235, 252
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 154, 173
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 237, 254
SduI GDGCHC 1 cut(s) 203
Sse9I AATT 2 cut(s) 11, 119
SseBI AGGCCT 1 cut(s) 77
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 235, 252
TaaI ACNGT 1 cut(s) 52
TasI AATT 2 cut(s) 11, 119
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 30, 144
TspRI CASTG 2 cut(s) 30, 144
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.