RchiOBHm_Chr5g0007171

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001097
Physical Location & Seq
Reverse (-)
4499555 .. 4503419
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28825

Sequence Viewer

Length: 984 bp
ATGCAACTGACCTCAGGAAGTTTGTTTTGCTATCAGAGCCTTTATTCTCCTAAGGTCCTTAGTGAGGTCATCTTTCTTTGTAAAATTTCCCCAATTTTATGTGTAAAGTCCAGAAATGGATCCCTCAATAACAGCAAGGAAGTGAGCCCCATTAAAGTTGTCAATGGAGTTGCCGTTGTACCAGGAAGGACTCGCACCCTGGTTGAGAGATTTGAAAGAAGAGAGAGATTTAGTAGCAATGACGATCAAGCAACTGGCTTATTTGGTCCCGTGATACCTGAATATCAAGCAACCAGCATATCTCGTACTGTGATACCTGAAGATCAAGCAAGTAGCATATCTAGTCCTGTGATGCCTGAAGATCAAGCAACTAGCATATGTAGTCCCGTGATACATGAAATGGATAAAACATTCACCATGCAGCGAGAAGAAGAACCTCAAATTTCTGGGAGGCACATGTCATCTGCAAACAATGATCCTGCTGAAGATCTGATGCAAACTCATGATGCATTCCTAAGTACCCTTCGATCCCGCCTGACAAAACTGCAGGTGGTGAGGCATTTTTGGGAACGAAATGATATTAAAGGTGCTATCAGTGCTATCAGAAAGCTGCCAGATCATTCGGTACAAGCAGATGTGATTAGTGTTCTCCTGGAGAAAATGGATATTCTGACATTAGATCTCTTTTCGTGTTTGCTGCCTGTGCTTCTGGGCTTACTTGATAGCAAAATTGAGAGGCATGCAAATGTGTCATTGGAGATGCTGTTGAAGCTAGTAGCAGTCTTTGGCCCAGTGATACGGTCAACCATTTCAGCACCTCCAGTGGTCGGAGTCAATATTCAGGCAGAGCAAAGGCTGGAGTGCTGCAACCAATGCTCTGTACACCTGCAAAAGATCCAGAAAATTCTCCCAGTCTTTGTAAGGAAGGGGGGCGTGCTGGCAAGATGTGCTCTAGAATTGAATCTAATTCTTCAAGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Katanin_con80 WD40

Protein Analysis

327

Amino Acids

36.3

Weight (kDa)

7.03

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Katanin_con80 PF13925 166 - 323 7.9e-54 con80 domain of Katanin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 538, 894
Acc36I ACCTGC 2 cut(s) 538, 894
AciI CCGC 1 cut(s) 532
AclWI GGATC 5 cut(s) 114, 127, 470, 522, 889
AcsI RAATTY 3 cut(s) 84, 441, 903
AcuI CTGAAG 3 cut(s) 339, 378, 504
AfaI GTAC 5 cut(s) 180, 307, 520, 627, 882
AfiI CCNNNNNNNGG 2 cut(s) 64, 827
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 4 cut(s) 215, 769, 961, 974
AjnI CCWGG 3 cut(s) 181, 198, 651
AluBI AGCT 2 cut(s) 610, 772
AluI AGCT 2 cut(s) 610, 772
Alw21I GWGCWC 1 cut(s) 952
AlwI GGATC 5 cut(s) 114, 127, 470, 522, 889
AoxI GGCC 1 cut(s) 787
ApeKI GCWGC 4 cut(s) 421, 610, 697, 864
ApoI RAATTY 3 cut(s) 84, 441, 903
AspS9I GGNCC 3 cut(s) 55, 266, 788
AsuHPI GGTGA 2 cut(s) 406, 565
AvaII GGWCC 2 cut(s) 55, 266
AxyI CCTNAGG 2 cut(s) 13, 51
BamHI GGATCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 4 cut(s) 433, 597, 684, 851
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 3 cut(s) 183, 200, 653
BfaI CTAG 4 cut(s) 342, 372, 773, 953
BfmI CTRYAG 1 cut(s) 545
BfuAI ACCTGC 2 cut(s) 538, 894
BglII AGATCT 2 cut(s) 487, 679
BisI GCNGC 4 cut(s) 422, 611, 698, 865
BlsI GCNGC 4 cut(s) 423, 612, 699, 866
Bme1390I CCNGG 3 cut(s) 183, 200, 653
Bme18I GGWCC 2 cut(s) 55, 266
BmgT120I GGNCC 3 cut(s) 55, 266, 788
BmiI GGNNCC 2 cut(s) 121, 268
BmrFI CCNGG 3 cut(s) 183, 200, 653
BmrI ACTGGG 2 cut(s) 785, 905
BmsI GCATC 4 cut(s) 342, 483, 496, 750
BmuI ACTGGG 2 cut(s) 785, 905
BpmI CTGGAG 3 cut(s) 674, 804, 878
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 749, 779
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 827
Bse1I ACTGG 4 cut(s) 259, 791, 821, 911
Bse21I CCTNAGG 2 cut(s) 13, 51
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 3 cut(s) 183, 200, 653
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 64, 827
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 4 cut(s) 259, 791, 821, 911
BseXI GCAGC 4 cut(s) 433, 597, 684, 851
BshFI GGCC 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 952
BslFI GGGAC 2 cut(s) 252, 369
BslI CCNNNNNNNGG 2 cut(s) 64, 827
BsmFI GGGAC 2 cut(s) 252, 369
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 1 cut(s) 789
Bsp1286I GDGCHC 2 cut(s) 149, 952
Bsp1407I TGTACA 1 cut(s) 880
BspACI CCGC 1 cut(s) 532
BspANI GGCC 1 cut(s) 789
BspCNI CTCAG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 121, 268
BspMAI CTGCAG 1 cut(s) 549
BspMI ACCTGC 2 cut(s) 538, 894
BspPI GGATC 5 cut(s) 114, 127, 470, 522, 889
BsrDI GCAATG 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 4 cut(s) 259, 791, 821, 911
BssECI CCNNGG 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 183, 200, 653
Bst4CI ACNGT 2 cut(s) 310, 801
Bst6I CTCTTC 1 cut(s) 214
BstAPI GCANNNNNTGC 2 cut(s) 873, 947
BstAUI TGTACA 1 cut(s) 880
BstC8I GCNNGC 3 cut(s) 741, 935, 939
BstDEI CTNAG 4 cut(s) 13, 51, 59, 515
BstENI CCTNNNNNAGG 1 cut(s) 62
BstMWI GCNNNNNNNGC 6 cut(s) 36, 596, 703, 769, 873, 947
BstNI CCWGG 3 cut(s) 183, 200, 653
BstNSI RCATGY 2 cut(s) 460, 743
BstSCI CCNGG 3 cut(s) 181, 198, 651
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 4 cut(s) 433, 597, 684, 851
BstX2I RGATCY 4 cut(s) 119, 487, 679, 894
BstYI RGATCY 4 cut(s) 119, 487, 679, 894
Bsu36I CCTNAGG 2 cut(s) 13, 51
BsuRI GGCC 1 cut(s) 789
BtsIMutI CAGTG 3 cut(s) 601, 798, 828
BveI ACCTGC 2 cut(s) 538, 894
Cac8I GCNNGC 3 cut(s) 741, 935, 939
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 55, 266, 788
Csp6I GTAC 5 cut(s) 179, 306, 519, 626, 881
CviAII CATG 5 cut(s) 395, 418, 457, 503, 740
CviJI RGCY 8 cut(s) 39, 147, 258, 610, 714, 772, 789, 856
CviKI_1 RGCY 8 cut(s) 39, 147, 258, 610, 714, 772, 789, 856
CviQI GTAC 5 cut(s) 179, 306, 519, 626, 881
DdeI CTNAG 4 cut(s) 13, 51, 59, 515
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 55, 266
Eco57I CTGAAG 3 cut(s) 339, 378, 504
Eco81I CCTNAGG 2 cut(s) 13, 51
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 181, 198, 651
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 5 cut(s) 398, 421, 460, 506, 743
FaqI GGGAC 2 cut(s) 252, 369
FatI CATG 5 cut(s) 394, 417, 456, 502, 739
FauI CCCGC 1 cut(s) 539
FauNDI CATATG 1 cut(s) 377
Fnu4HI GCNGC 4 cut(s) 422, 611, 698, 865
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 422, 611, 698, 865
FspBI CTAG 4 cut(s) 342, 372, 773, 953
GluI GCNGC 4 cut(s) 422, 611, 698, 865
GsuI CTGGAG 3 cut(s) 674, 804, 878
HaeIII GGCC 1 cut(s) 789
Hin1II CATG 5 cut(s) 398, 421, 460, 506, 743
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HinfI GANTC 4 cut(s) 190, 831, 961, 977
HphI GGTGA 2 cut(s) 406, 565
Hpy166II GTNNAC 2 cut(s) 804, 883
Hpy188I TCNGA 5 cut(s) 36, 492, 605, 672, 830
Hpy188III TCNNGA 6 cut(s) 15, 111, 503, 898, 953, 974
Hpy8I GTNNAC 2 cut(s) 804, 883
HpyAV CCTTC 3 cut(s) 180, 533, 919
HpyCH4III ACNGT 2 cut(s) 310, 801
HpyCH4V TGCA 9 cut(s) 4, 421, 467, 496, 509, 547, 743, 867, 889
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 596, 703, 769, 873, 947
HpyF3I CTNAG 4 cut(s) 13, 51, 59, 515
Hsp92II CATG 5 cut(s) 398, 421, 460, 506, 743
Lsp1109I GCAGC 4 cut(s) 433, 597, 684, 851
LweI GCATC 4 cut(s) 342, 483, 496, 750
MaeI CTAG 4 cut(s) 342, 372, 773, 953
MboII GAAGA 7 cut(s) 231, 332, 371, 440, 443, 497, 962
MflI RGATCY 4 cut(s) 119, 487, 679, 894
MhlI GDGCHC 2 cut(s) 149, 952
MluCI AATT 7 cut(s) 84, 93, 441, 729, 903, 956, 966
MlyI GAGTC 2 cut(s) 184, 840
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 8 cut(s) 22, 58, 134, 444, 447, 549, 729, 828
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 2 cut(s) 153, 582
MslI CAYNNNNRTG 1 cut(s) 744
MspR9I CCNGG 3 cut(s) 183, 200, 653
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 3 cut(s) 183, 200, 653
MwoI GCNNNNNNNGC 6 cut(s) 36, 596, 703, 769, 873, 947
NdeI CATATG 1 cut(s) 377
NlaIII CATG 5 cut(s) 398, 421, 460, 506, 743
NlaIV GGNNCC 2 cut(s) 121, 268
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 2 cut(s) 460, 743
PaeI GCATGC 1 cut(s) 743
PagI TCATGA 1 cut(s) 502
PaqCI CACCTGC 2 cut(s) 538, 894
PciI ACATGT 1 cut(s) 456
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 961
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 4 cut(s) 423, 612, 699, 866
PleI GAGTC 2 cut(s) 184, 839
PpsI GAGTC 2 cut(s) 184, 839
PpuMI RGGWCCY 1 cut(s) 55
PscI ACATGT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 181, 198, 651
PspGI CCWGG 3 cut(s) 181, 198, 651
PspN4I GGNNCC 2 cut(s) 121, 268
PspPI GGNCC 3 cut(s) 55, 266, 788
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 549
PsuI RGATCY 4 cut(s) 119, 487, 679, 894
RsaI GTAC 5 cut(s) 180, 307, 520, 627, 882
RsaNI GTAC 5 cut(s) 179, 306, 519, 626, 881
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 2 cut(s) 153, 582
SatI GCNGC 4 cut(s) 422, 611, 698, 865
Sau96I GGNCC 3 cut(s) 55, 266, 788
SchI GAGTC 2 cut(s) 184, 840
ScrFI CCNGG 3 cut(s) 183, 200, 653
SduI GDGCHC 2 cut(s) 149, 952
SfaNI GCATC 4 cut(s) 342, 483, 496, 750
SfcI CTRYAG 1 cut(s) 545
SinI GGWCC 2 cut(s) 55, 266
SmiMI CAYNNNNRTG 1 cut(s) 744
SphI GCATGC 1 cut(s) 743
Sse9I AATT 7 cut(s) 84, 93, 441, 729, 903, 956, 966
SsiI CCGC 1 cut(s) 532
SspI AATATT 1 cut(s) 838
SspMI CTAG 4 cut(s) 342, 372, 773, 953
StyD4I CCNGG 3 cut(s) 181, 198, 651
TaaI ACNGT 2 cut(s) 310, 801
TaqI TCGA 1 cut(s) 526
TasI AATT 7 cut(s) 84, 93, 441, 729, 903, 956, 966
TatI WGTACW 1 cut(s) 880
TfiI GAWTC 1 cut(s) 961
Tru1I TTAA 2 cut(s) 153, 582
Tru9I TTAA 2 cut(s) 153, 582
TscAI CASTG 3 cut(s) 601, 798, 828
TseI GCWGC 4 cut(s) 421, 610, 697, 864
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 3 cut(s) 601, 798, 828
VpaK11BI GGWCC 2 cut(s) 55, 266
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 3 cut(s) 84, 441, 903
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 2 cut(s) 460, 743
XspI CTAG 4 cut(s) 342, 372, 773, 953
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.