Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Forward (+)

90115122 .. 90117010

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATGAGGCATGCAAATGTGTCATTGGAGATGCTGTTGAAGCTAGTAGCAGTCTTTGGCCCAGTGATGCGGTCTACCATTTCAGCACCTCCAGCGGTCGGAGTCAATCTTCAGGCAGAGCAAAGGCTGGAGTGCTGCAACCAATGCTCTGTACACCTGCAAAAGATCCAGAAAATTCTCCCCGTCTTTGTAAGTTTTGGAGGTGGAATGACCTTAAGGAAATATTTGTTGCTATTCCTTTTCAATTAGATGGAAGGGGGCGTGCTGGCAAGATGTGCTCTAGAACTGAATCTAATTCTTCAAGAGTCATAACAGATACTGTCTGTCAGAACTGCAAAAAGACTAGAGCTCAGGAATTTTGTGAGGCAAAGATTAAAGCAATATCAGTCTTGCCTGAGGAGCTTGAAGACAGTAGTCATCCCTTCCTAGAGTCATCTTCGGCATTACTTAATATTGGTATACTAGAGCTCAAGAATTTTGTGCCAGTCTTTTTGCCTGAGGAGCTTCAAGACAGGAGAAGTGATCCCTGCAGTATTCGCGTTCAGGCATTGCGCAAATTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

7.5

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	166
AccI	GTMKAC	2 cut(s)	75, 460
AccII	CGCG	1 cut(s)	540
AciI	CCGC	2 cut(s)	71, 96
AclWI	GGATC	2 cut(s)	161, 518
AcsI	RAATTY	4 cut(s)	175, 356, 475, 557
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	41, 245, 303, 407, 509
AluBI	AGCT	5 cut(s)	44, 350, 403, 469, 505
AluI	AGCT	5 cut(s)	44, 350, 403, 469, 505
Alw21I	GWGCWC	3 cut(s)	281, 352, 471
AlwI	GGATC	2 cut(s)	161, 518
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	4 cut(s)	175, 356, 475, 557
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	60
AxyI	CCTNAGG	2 cut(s)	396, 498
BanII	GRGCYC	2 cut(s)	352, 471
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	3 cut(s)	281, 352, 471
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	245
BfaI	CTAG	5 cut(s)	45, 282, 345, 428, 464
BfmI	CTRYAG	1 cut(s)	529
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	22, 58
BmuI	ACTGGG	1 cut(s)	57
BoxI	GACNNNNGTC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	2 cut(s)	76, 150
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	63, 485
Bse21I	CCTNAGG	2 cut(s)	396, 498
Bse3DI	GCAATG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	10, 418
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	365, 387, 489
BseNI	ACTGG	2 cut(s)	63, 485
BseRI	GAGGAG	2 cut(s)	413, 515
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	3 cut(s)	281, 352, 471
BslI	CCNNNNNNNGG	1 cut(s)	99
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	3 cut(s)	281, 352, 471
Bsp1407I	TGTACA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	166, 523
BspACI	CCGC	2 cut(s)	71, 96
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	364, 388, 490
BspFNI	CGCG	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	2 cut(s)	161, 518
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	63, 485
BssMI	GATC	2 cut(s)	166, 523
BssNAI	GTATAC	1 cut(s)	461
Bst1107I	GTATAC	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	322, 413
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	2 cut(s)	145, 276
BstAUI	TGTACA	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	13, 264, 268
BstDEI	CTNAG	3 cut(s)	351, 396, 498
BstF5I	GGATG	2 cut(s)	10, 418
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	169, 526
BstMBI	GATC	2 cut(s)	166, 523
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 93, 145, 276, 400, 502, 537
BstNSI	RCATGY	1 cut(s)	15
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	461
Bsu36I	CCTNAGG	2 cut(s)	396, 498
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	10, 418
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	13, 264, 268
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	7 cut(s)	44, 61, 128, 350, 403, 469, 505
CviKI_1	RGCY	7 cut(s)	44, 61, 128, 350, 403, 469, 505
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	3 cut(s)	351, 396, 498
DpnI	GATC	2 cut(s)	168, 525
DpnII	GATC	2 cut(s)	166, 523
Ecl136II	GAGCTC	2 cut(s)	350, 469
Eco24I	GRGCYC	2 cut(s)	352, 471
Eco53kI	GAGCTC	2 cut(s)	350, 469
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	2 cut(s)	396, 498
EcoICRI	GAGCTC	2 cut(s)	350, 469
EcoT38I	GRGCYC	2 cut(s)	352, 471
FaeI	CATG	1 cut(s)	15
FaiI	YATR	3 cut(s)	13, 311, 461
FatI	CATG	1 cut(s)	11
FblI	GTMKAC	2 cut(s)	75, 460
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	17, 405
FriOI	GRGCYC	2 cut(s)	352, 471
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	5 cut(s)	45, 282, 345, 428, 464
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	2 cut(s)	76, 150
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HinfI	GANTC	4 cut(s)	103, 290, 306, 431
Hpy166II	GTNNAC	3 cut(s)	76, 155, 461
Hpy188I	TCNGA	2 cut(s)	102, 330
Hpy188III	TCNNGA	7 cut(s)	170, 282, 303, 353, 472, 509, 564
Hpy8I	GTNNAC	3 cut(s)	76, 155, 461
HpyAV	CCTTC	2 cut(s)	249, 433
HpyCH4III	ACNGT	2 cut(s)	322, 413
HpyCH4V	TGCA	5 cut(s)	15, 139, 161, 336, 531
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 93, 145, 276, 400, 502, 537
HpyF3I	CTNAG	3 cut(s)	351, 396, 498
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	166, 523
LmnI	GCTCC	2 cut(s)	400, 502
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	22, 58
MaeI	CTAG	5 cut(s)	45, 282, 345, 428, 464
MalI	GATC	2 cut(s)	168, 525
MboI	GATC	2 cut(s)	166, 523
MboII	GAAGA	4 cut(s)	102, 291, 419, 429
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	281, 352, 471
MluCI	AATT	6 cut(s)	175, 245, 295, 356, 475, 557
MlyI	GAGTC	3 cut(s)	112, 315, 440
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	100, 195, 358, 391, 493
MseI	TTAA	3 cut(s)	216, 375, 450
MslI	CAYNNNNRTG	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	7 cut(s)	41, 93, 145, 276, 400, 502, 537
NdeII	GATC	2 cut(s)	166, 523
NlaIII	CATG	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	1 cut(s)	15
PaeI	GCATGC	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	3 cut(s)	111, 314, 439
PpsI	GAGTC	3 cut(s)	111, 314, 439
PshAI	GACNNNNGTC	1 cut(s)	414
Psp124BI	GAGCTC	2 cut(s)	352, 471
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	16
SacI	GAGCTC	2 cut(s)	352, 471
SaqAI	TTAA	3 cut(s)	216, 375, 450
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	166, 523
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	3 cut(s)	112, 315, 440
SduI	GDGCHC	3 cut(s)	281, 352, 471
SetI	ASST	9 cut(s)	46, 92, 160, 206, 216, 352, 405, 471, 507
SfaNI	GCATC	2 cut(s)	22, 58
SfcI	CTRYAG	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	215, 470
SmoI	CTYRAG	2 cut(s)	215, 470
SphI	GCATGC	1 cut(s)	15
Sse9I	AATT	6 cut(s)	175, 245, 295, 356, 475, 557
SsiI	CCGC	2 cut(s)	71, 96
SspI	AATATT	2 cut(s)	225, 454
SspMI	CTAG	5 cut(s)	45, 282, 345, 428, 464
SstI	GAGCTC	2 cut(s)	352, 471
TaaI	ACNGT	2 cut(s)	322, 413
TasI	AATT	6 cut(s)	175, 245, 295, 356, 475, 557
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	216, 375, 450
Tru9I	TTAA	3 cut(s)	216, 375, 450
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	4 cut(s)	175, 356, 475, 557
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	1 cut(s)	15
XmiI	GTMKAC	2 cut(s)	75, 460
XspI	CTAG	5 cut(s)	45, 282, 345, 428, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.