Rh4DG027100

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
4831305 .. 4834863
3559 bp
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UTR
Exon/CDS
Intron
Rh4DG027100.1

Sequence Viewer

Length: 540 bp
ATGGGGGTCAAATTAGATAGACAGGCAGAAATAACAGGAGTACGCGCAATTACTTTCCACCCTGATGGGAGGACAATATTTTCTGGATTGGATGACAGTTTGAAGGTTTATTCATGGGAGCCTGTAATATCCCATGATTCTGTTGATATGGGATGGTCAAGACTTGCTGACGTATGCATTCATGACGGGAAGCTGTTGGGATGCTCTTACTATCGAAATTCTATTGGAGTCTGGGTTGCGGATGTGTCGCTTATTAAGCCATATGGAGCTGGTTCAACACCTGAGCAAAATGACTGTTTAGATGAGAAATCTCATGTAAAGTTGCAAGGAATCATGGAGAAGGAAACCAGTGCTAAGAAGCAGATTCCTGCAGCAGGGTTGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCCCTGGTTTCGCCTAGCATCGTACCTCGAAGCAGTCGCAATGCAAAAGATTCAGCTAACTCTGGAAGAGAATCTGTTGCATTTCCGAAAAGGCGTGCTATGTTGCTCAGACCAGCTCATGTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

19.59

Weight (kDa)

9.15

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 2 cut(s) 42, 438
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 103, 276
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 4 cut(s) 193, 269, 470, 530
AluI AGCT 4 cut(s) 193, 269, 470, 530
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 59, 147
BciT130I CCWGG 1 cut(s) 419
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 191, 441
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 4 cut(s) 97, 158, 206, 247
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 2 cut(s) 273, 535
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 374
BsmI GAATGC 1 cut(s) 177
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 2 cut(s) 274, 534
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 98, 296, 406
Bst6I CTCTTC 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 282, 354, 521
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 4 cut(s) 97, 158, 206, 247
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 65
BtsCI GGATG 4 cut(s) 97, 158, 206, 247
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 510
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 41, 437
CviAII CATG 6 cut(s) 114, 134, 182, 314, 334, 533
CviJI RGCY 6 cut(s) 121, 193, 259, 269, 470, 530
CviKI_1 RGCY 6 cut(s) 121, 193, 259, 269, 470, 530
CviQI GTAC 2 cut(s) 41, 437
DdeI CTNAG 3 cut(s) 282, 354, 521
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 6 cut(s) 117, 137, 185, 317, 337, 536
FatI CATG 6 cut(s) 113, 133, 181, 313, 333, 532
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 4 cut(s) 104, 165, 213, 254
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 47
Hin1II CATG 6 cut(s) 117, 137, 185, 317, 337, 536
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 6 cut(s) 137, 228, 330, 364, 464, 485
Hpy188I TCNGA 2 cut(s) 501, 524
Hpy188III TCNNGA 4 cut(s) 84, 159, 182, 477
HpyAV CCTTC 2 cut(s) 97, 334
HpyCH4III ACNGT 3 cut(s) 98, 296, 406
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 177, 325, 371, 458, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 3 cut(s) 282, 354, 521
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 117, 137, 185, 317, 337, 536
HspAI GCGC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 118, 266, 387
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 191, 441
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 171
MboII GAAGA 1 cut(s) 492
MluCI AATT 3 cut(s) 11, 48, 217
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 2 cut(s) 63, 450
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeI CATATG 1 cut(s) 262
NlaIII CATG 6 cut(s) 117, 137, 185, 317, 337, 536
NlaIV GGNNCC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 179
PagI TCATGA 1 cut(s) 181
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 5 cut(s) 137, 330, 364, 464, 485
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 2 cut(s) 42, 438
RsaNI GTAC 2 cut(s) 41, 437
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 372
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 419
SetI ASST 8 cut(s) 108, 174, 195, 271, 283, 442, 472, 532
SfaNI GCATC 2 cut(s) 191, 441
SfcI CTRYAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 3 cut(s) 11, 48, 217
SsiI CCGC 1 cut(s) 239
SspI AATATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 98, 296, 406
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 214, 442
TasI AATT 3 cut(s) 11, 48, 217
TfiI GAWTC 5 cut(s) 137, 330, 364, 464, 485
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 102, 170, 411
TspRI CASTG 1 cut(s) 355
XagI CCTNNNNNAGG 1 cut(s) 372
XapI RAATTY 1 cut(s) 217
XspI CTAG 1 cut(s) 429
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.