Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003826.1

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Forward (+)

59047 .. 59609

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003826.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgtacaggcatggaaatgtgtcattggagatgctgttgaagctagtagcagtctttggcccagtgatacgatctaccatttcagcacctccagaggtcggagtcaatcttcaggcagagcaaaggctggaatgctgcaaccaatgctctatacacctgcaaaagatccagaaaattatcgcagtctttgtaaggttagatcctgactccaatgatgtgatattgaaaagtggtgccaaaattagtccgcagcttcttctaaaggtgtcctcaatggctcaatccaccagccttaaggatgtccatgaggatggatgttcacttatgagcccatgtgagtataatggcaagcaaaatcctgccctagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

123

Amino Acids

13.45

Weight (kDa)

7.64

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	160, 194
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	40, 226
AluBI	AGCT	2 cut(s)	43, 253
AluI	AGCT	2 cut(s)	43, 253
AlwI	GGATC	2 cut(s)	160, 194
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	135, 250
AspS9I	GGNCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	122, 262
BccI	CCATC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	44, 365
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	136, 251
BlsI	GCNGC	2 cut(s)	137, 252
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	62
BseGI	GGATG	3 cut(s)	304, 316, 320
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	122, 262
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	71, 165, 199
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	160, 194
BspT107I	GGYRCC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	71, 165, 199
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	304, 316, 320
BstKTI	GATC	3 cut(s)	74, 168, 202
BstMBI	GATC	3 cut(s)	71, 165, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 144
BstV1I	GCAGC	2 cut(s)	122, 262
BstX2I	RGATCY	2 cut(s)	165, 199
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	2 cut(s)	165, 199
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	304, 316, 320
BtsIMutI	CAGTG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	11, 305, 333
CviJI	RGCY	7 cut(s)	43, 60, 127, 253, 278, 291, 330
CviKI_1	RGCY	7 cut(s)	43, 60, 127, 253, 278, 291, 330
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	73, 167, 201
DpnII	GATC	3 cut(s)	71, 165, 199
Eco24I	GRGCYC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	3 cut(s)	14, 308, 336
FaiI	YATR	7 cut(s)	12, 152, 306, 326, 334, 342, 370
FatI	CATG	3 cut(s)	10, 304, 332
Fnu4HI	GCNGC	2 cut(s)	136, 251
FokI	GGATG	3 cut(s)	311, 323, 327
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	136, 251
FspBI	CTAG	2 cut(s)	44, 365
GluI	GCNGC	2 cut(s)	136, 251
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	14, 308, 336
HinfI	GANTC	2 cut(s)	102, 206
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	92, 169, 203
Hpy8I	GTNNAC	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	138, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 144
Hsp92II	CATG	3 cut(s)	14, 308, 336
Kzo9I	GATC	3 cut(s)	71, 165, 199
LpnPI	CCDG	8 cut(s)	75, 98, 105, 113, 170, 182, 216, 301
Lsp1109I	GCAGC	2 cut(s)	122, 262
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	44, 365
MalI	GATC	3 cut(s)	73, 167, 201
MboI	GATC	3 cut(s)	71, 165, 199
MboII	GAAGA	2 cut(s)	101, 248
MflI	RGATCY	2 cut(s)	165, 199
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	174, 240
MlyI	GAGTC	2 cut(s)	111, 200
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	88, 99, 280, 301
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	2 cut(s)	15, 309
MspCI	CTTAAG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	40, 144
NdeII	GATC	3 cut(s)	71, 165, 199
NlaIII	CATG	3 cut(s)	14, 308, 336
NlaIV	GGNNCC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	137, 252
PleI	GAGTC	2 cut(s)	110, 200
PpsI	GAGTC	2 cut(s)	110, 200
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	165, 199
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	15, 309
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	136, 251
Sau3AI	GATC	3 cut(s)	71, 165, 199
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	111, 200
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	7 cut(s)	45, 91, 99, 159, 197, 255, 267
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	15, 309
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	174, 240
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	2 cut(s)	44, 365
TasI	AATT	2 cut(s)	174, 240
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	2 cut(s)	135, 250
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	293
XspI	CTAG	2 cut(s)	44, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.