Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Reverse (-)

43770634 .. 43775555

Gene Structure 4922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAGGGTTTTCTGGGTTTGATTTTGGGTTGGATTTTGGGTTGGATTTCTGCGTTCAAGGCTTCAAGCTTGGTGATTCTTCATTCTTCACGCTCGATTTCTGGGTTCAAGTGGTGATTCTTCAAGCTCGATTTCTGGGTTTTGGATTCGATGTTTCTACAAGCTCGAAATATAAGTTATGCAAAGCTTGTAGCCTCATTAGTTCAGCAGAGAGAACTGTGAAATTCTGGGATCTAGAAACTTTTGAACTGATTGGATCTACCAGGCCTGAGCCTACAGGAGTACGCGCAATTACTTTCCACCCTGAAGGGAGGACAATATTTTCTGGATTGGATGACAGTTTGAAGGTTTATTCATGGGAGCCTGTAATATCCCATGATTCTGTTGATATGGGATGGTCAAGACTTGCTGACGTATGCATTCATGACGGGAAGCTGTTGGGATGCTCTTACTATCGAAATTCTATTGGAGTCTGGGTTGTGGATGTGTCGCTTATTAAGCCATATGGAGCTGGTTCAACACCTGAGCAAAATGACTGTTTAGATGAGAAATCTCATGTAAAGTTGCAAGGAATCATGGAGAAGGAAACCAGTGCTAAGAAGCAGATTCCTGCAGCAGGGTTGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCCCTGGTTTCGCCTAGCATCGTACCTCGAAGCAGTCCCAATGCAAAAGATTCAGCTAACTCTGGAAGAGAATCTGTTGCATTTCCGAAAAGGCGTGCTATGTTGCTCAGACCAGCTCATGTGCGAAGCCCATCAAATAGCAAAGTTGACGTGGAGAAGCTACCGTTGGCCATTGAATCTGAAACTTTCAGCAGTATGACGAGTAAATTGGATGGTGCAGTGGGTCTCAGTTCTCAAATCAAAACTGTATCAGAAGATAGTGATAGAGAGGCCTGTAAGGAAAAACATTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

317

Amino Acids

34.7

Weight (kDa)

6.61

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AclWI	GGATC	2 cut(s)	240, 265
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	2 cut(s)	224, 460
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	285, 681
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	8 cut(s)	59, 67, 110, 125, 248, 346, 519, 833
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	263, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AluBI	AGCT	9 cut(s)	70, 128, 165, 188, 436, 512, 713, 773, 817
AluI	AGCT	9 cut(s)	70, 128, 165, 188, 436, 512, 713, 773, 817
Alw26I	GTCTC	1 cut(s)	887
AlwI	GGATC	2 cut(s)	240, 265
AoxI	GGCC	3 cut(s)	266, 825, 927
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	224, 460
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	86, 127
BalI	TGGCCA	1 cut(s)	827
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	390, 796, 863
BciT130I	CCWGG	2 cut(s)	265, 662
BcoDI	GTCTC	1 cut(s)	887
BfaI	CTAG	2 cut(s)	236, 672
BfmI	CTRYAG	2 cut(s)	276, 612
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	265, 662
BmgBI	CACGTC	1 cut(s)	808
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	265, 662
BmsI	GCATC	2 cut(s)	434, 684
Bpu10I	CCTNAGC	2 cut(s)	270, 525
BsaI	GGTCTC	1 cut(s)	887
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	265, 662
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	5 cut(s)	340, 401, 449, 490, 874
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	4 cut(s)	261, 516, 778, 898
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	268, 827, 929
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	887
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	3 cut(s)	268, 827, 929
Bso31I	GGTCTC	1 cut(s)	887
Bsp143I	GATC	2 cut(s)	232, 257
BspANI	GGCC	3 cut(s)	268, 827, 929
BspCNI	CTCAG	4 cut(s)	262, 517, 777, 897
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	2 cut(s)	240, 265
BspTNI	GGTCTC	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	2 cut(s)	232, 257
Bst2UI	CCWGG	2 cut(s)	265, 662
Bst4CI	ACNGT	6 cut(s)	220, 341, 539, 649, 822, 904
Bst6I	CTCTTC	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	6 cut(s)	270, 525, 597, 764, 884, 951
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstF5I	GGATG	5 cut(s)	340, 401, 449, 490, 874
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	235, 260
BstMAI	GTCTC	1 cut(s)	887
BstMBI	GATC	2 cut(s)	232, 257
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 499
BstNI	CCWGG	2 cut(s)	265, 662
BstSCI	CCNGG	2 cut(s)	263, 660
BstSFI	CTRYAG	2 cut(s)	276, 612
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	626
BstX2I	RGATCY	2 cut(s)	232, 257
BstYI	RGATCY	2 cut(s)	232, 257
BsuRI	GGCC	3 cut(s)	268, 827, 929
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	5 cut(s)	340, 401, 449, 490, 874
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	2 cut(s)	598, 882
Cac8I	GCNNGC	1 cut(s)	753
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	284, 680
CviAII	CATG	6 cut(s)	357, 377, 425, 557, 577, 776
CviQI	GTAC	2 cut(s)	284, 680
DdeI	CTNAG	6 cut(s)	270, 525, 597, 764, 884, 951
DpnI	GATC	2 cut(s)	234, 259
DpnII	GATC	2 cut(s)	232, 257
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	718
Eco147I	AGGCCT	2 cut(s)	268, 929
Eco31I	GGTCTC	1 cut(s)	887
Eco57I	CTGAAG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	263, 660
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	6 cut(s)	360, 380, 428, 560, 580, 779
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	6 cut(s)	356, 376, 424, 556, 576, 775
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	5 cut(s)	347, 408, 456, 497, 881
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	2 cut(s)	236, 672
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	268, 827, 929
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	360, 380, 428, 560, 580, 779
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	2 cut(s)	68, 186
HphI	GGTGA	2 cut(s)	86, 127
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	4 cut(s)	744, 767, 838, 910
Hpy188III	TCNNGA	5 cut(s)	236, 327, 402, 425, 720
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	302, 340, 577
HpyCH4III	ACNGT	6 cut(s)	220, 341, 539, 649, 822, 904
HpyCH4IV	ACGT	2 cut(s)	414, 807
HpyCH4V	TGCA	7 cut(s)	183, 420, 568, 614, 701, 737, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 499
HpyF3I	CTNAG	6 cut(s)	270, 525, 597, 764, 884, 951
HpySE526I	ACGT	2 cut(s)	414, 807
Hsp92II	CATG	6 cut(s)	360, 380, 428, 560, 580, 779
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	232, 257
LmnI	GCTCC	3 cut(s)	361, 509, 630
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	434, 684
MaeI	CTAG	2 cut(s)	236, 672
MaeII	ACGT	2 cut(s)	414, 807
MalI	GATC	2 cut(s)	234, 259
MboI	GATC	2 cut(s)	232, 257
MboII	GAAGA	5 cut(s)	72, 79, 113, 735, 923
MflI	RGATCY	2 cut(s)	232, 257
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	4 cut(s)	224, 291, 460, 863
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	12, 24
MnlI	CCTC	4 cut(s)	206, 306, 693, 919
Mox20I	TGGCCA	1 cut(s)	827
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	827
MspR9I	CCNGG	2 cut(s)	265, 662
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	265, 662
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	60, 499
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	2 cut(s)	232, 257
NlaIII	CATG	6 cut(s)	360, 380, 428, 560, 580, 779
NlaIV	GGNNCC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	422
PagI	TCATGA	1 cut(s)	424
PceI	AGGCCT	2 cut(s)	268, 929
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	9 cut(s)	77, 118, 147, 380, 573, 607, 707, 728, 833
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	263, 660
PspGI	CCWGG	2 cut(s)	263, 660
PspN4I	GGNNCC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	232, 257
RsaI	GTAC	2 cut(s)	285, 681
RsaNI	GTAC	2 cut(s)	284, 680
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	2 cut(s)	232, 257
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	2 cut(s)	265, 662
SfaNI	GCATC	2 cut(s)	434, 684
SfcI	CTRYAG	2 cut(s)	276, 612
Sse9I	AATT	4 cut(s)	224, 291, 460, 863
SseBI	AGGCCT	2 cut(s)	268, 929
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	2 cut(s)	236, 672
StuI	AGGCCT	2 cut(s)	268, 929
StyD4I	CCNGG	2 cut(s)	263, 660
TaaI	ACNGT	6 cut(s)	220, 341, 539, 649, 822, 904
TaiI	ACGT	2 cut(s)	417, 810
TaqI	TCGA	6 cut(s)	96, 130, 150, 167, 457, 685
TasI	AATT	4 cut(s)	224, 291, 460, 863
TfiI	GAWTC	9 cut(s)	77, 118, 147, 380, 573, 607, 707, 728, 833
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	598, 882
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	72, 345, 413, 654
TspRI	CASTG	2 cut(s)	598, 882
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	2 cut(s)	224, 460
XbaI	TCTAGA	1 cut(s)	235
XspI	CTAG	2 cut(s)	236, 672
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.