Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Forward (+)

90141743 .. 90146226

Gene Structure 4484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAACTGACCTCAGGAAGTTTGTTTTGCTATCAGAGCCTTTATTCTCCTAAGGTCCTTAATGAGGTCATCTTTCTTTTGACTTATTTTGTTAATGTTTCACGAAATGGATCCCTCAATAACAGCAAGGAAGTGAGCCCCGTTAAAGTTGTCAATGGAGTTGTCGTTGTACCAGGAAGGGCTCGCACCCTGGTTGAGAGATTTGAAAGGAGAGAGAGATTTAGTAGCAATGACGATCAAGCAACTGGCGTATTTGGTCCCGTGATACCTGAATATCAAGCAACCAGCATATCTCGTACTGTGATACTGATACCTGAAGATCAAGCAAGTAGCATATCTAGTCCTGTGATGCCTGAAGATCAAGCAACTAGCATATGTTGTCCCATGATGCATGAAATGGATAAAACATTCACCATGCAGCGAGAAGAAGAACCTCAAAGTTCTGGGAGGCACATGTCATCTGCAAACAATGATCCTGCTGCAGATCTGATGCAAACTCATGATGCATTCCTAAGTACCCTTCGATCCCGCCTGATAAAACTGCAGGTGGTGAGGCATTTTTGGGAACGAAATGATATTAAAGGTGCTATCAGTGCTATCAGAAAGCTGCCAGATCATTCGGTGGGTATTTATTGGATAATTTCGTGTGTTACATGTACTGATTCTGGTGGTCTTAAAGGTCCGGTGTTTCTCTCCATATTTGGTTTTCTAATAATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

240

Amino Acids

26.77

Weight (kDa)

6.52

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Katanin_con80	PF13925	165 - 208	2.5e-12	con80 domain of Katanin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	4 cut(s)	105, 118, 467, 519
AcuI	CTGAAG	2 cut(s)	336, 375
AfaI	GTAC	4 cut(s)	171, 298, 517, 658
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	2 cut(s)	453, 653
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	172, 189
AluBI	AGCT	1 cut(s)	607
AluI	AGCT	1 cut(s)	607
AlwI	GGATC	4 cut(s)	105, 118, 467, 519
ApeKI	GCWGC	3 cut(s)	418, 479, 607
AspS9I	GGNCC	3 cut(s)	55, 257, 680
AsuHPI	GGTGA	2 cut(s)	403, 562
AvaII	GGWCC	3 cut(s)	55, 257, 680
AxyI	CCTNAGG	2 cut(s)	13, 51
BamHI	GGATCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	140, 184
BbvI	GCAGC	3 cut(s)	430, 466, 594
BciT130I	CCWGG	2 cut(s)	174, 191
BfaI	CTAG	2 cut(s)	339, 369
BfmI	CTRYAG	2 cut(s)	480, 542
BfuAI	ACCTGC	1 cut(s)	535
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	3 cut(s)	419, 480, 608
BlsI	GCNGC	3 cut(s)	420, 481, 609
Bme1390I	CCNGG	2 cut(s)	174, 191
Bme18I	GGWCC	3 cut(s)	55, 257, 680
BmgT120I	GGNCC	3 cut(s)	55, 257, 680
BmiI	GGNNCC	2 cut(s)	112, 259
BmrFI	CCNGG	2 cut(s)	174, 191
BmsI	GCATC	4 cut(s)	339, 378, 480, 493
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	250
Bse21I	CCTNAGG	2 cut(s)	13, 51
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	174, 191
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	430, 466, 594
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	2 cut(s)	243, 366
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	243, 366
BsmI	GAATGC	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	140, 184
Bsp143I	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
BspACI	CCGC	1 cut(s)	529
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	112, 259
BspMAI	CTGCAG	2 cut(s)	484, 546
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	4 cut(s)	105, 118, 467, 519
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
Bst2UI	CCWGG	2 cut(s)	174, 191
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	13, 51, 512
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstKTI	GATC	9 cut(s)	113, 238, 322, 361, 475, 487, 527, 616, 720
BstMBI	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 593
BstNI	CCWGG	2 cut(s)	174, 191
BstNSI	RCATGY	2 cut(s)	457, 657
BstSCI	CCNGG	2 cut(s)	172, 189
BstSFI	CTRYAG	2 cut(s)	480, 542
BstV1I	GCAGC	3 cut(s)	430, 466, 594
BstX2I	RGATCY	2 cut(s)	110, 484
BstYI	RGATCY	2 cut(s)	110, 484
Bsu36I	CCTNAGG	2 cut(s)	13, 51
BtsIMutI	CAGTG	1 cut(s)	598
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	55, 257, 680
Csp6I	GTAC	4 cut(s)	170, 297, 516, 657
CviAII	CATG	6 cut(s)	385, 392, 415, 454, 500, 654
CviJI	RGCY	4 cut(s)	39, 138, 182, 607
CviKI_1	RGCY	4 cut(s)	39, 138, 182, 607
CviQI	GTAC	4 cut(s)	170, 297, 516, 657
DdeI	CTNAG	3 cut(s)	13, 51, 512
DpnI	GATC	9 cut(s)	112, 237, 321, 360, 474, 486, 526, 615, 719
DpnII	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
Eco24I	GRGCYC	2 cut(s)	140, 184
Eco47I	GGWCC	3 cut(s)	55, 257, 680
Eco57I	CTGAAG	2 cut(s)	336, 375
Eco81I	CCTNAGG	2 cut(s)	13, 51
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	172, 189
EcoT22I	ATGCAT	2 cut(s)	393, 508
EcoT38I	GRGCYC	2 cut(s)	140, 184
FaeI	CATG	6 cut(s)	388, 395, 418, 457, 503, 657
FaqI	GGGAC	2 cut(s)	243, 366
FatI	CATG	6 cut(s)	384, 391, 414, 453, 499, 653
FauI	CCCGC	1 cut(s)	536
FauNDI	CATATG	1 cut(s)	374
Fnu4HI	GCNGC	3 cut(s)	419, 480, 608
FriOI	GRGCYC	2 cut(s)	140, 184
Fsp4HI	GCNGC	3 cut(s)	419, 480, 608
FspBI	CTAG	2 cut(s)	339, 369
GluI	GCNGC	3 cut(s)	419, 480, 608
HapII	CCGG	1 cut(s)	683
Hin1II	CATG	6 cut(s)	388, 395, 418, 457, 503, 657
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	2 cut(s)	403, 562
Hpy188I	TCNGA	4 cut(s)	36, 489, 602, 722
Hpy188III	TCNNGA	3 cut(s)	15, 102, 500
HpyAV	CCTTC	2 cut(s)	171, 530
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	8 cut(s)	4, 391, 418, 464, 482, 493, 506, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 593
HpyF3I	CTNAG	3 cut(s)	13, 51, 512
Hsp92II	CATG	6 cut(s)	388, 395, 418, 457, 503, 657
Kzo9I	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
Lsp1109I	GCAGC	3 cut(s)	430, 466, 594
LweI	GCATC	4 cut(s)	339, 378, 480, 493
MaeI	CTAG	2 cut(s)	339, 369
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	9 cut(s)	112, 237, 321, 360, 474, 486, 526, 615, 719
MboI	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
MboII	GAAGA	4 cut(s)	329, 368, 437, 440
MflI	RGATCY	2 cut(s)	110, 484
MhlI	GDGCHC	2 cut(s)	140, 184
MluCI	AATT	1 cut(s)	639
MnlI	CCTC	6 cut(s)	22, 58, 125, 441, 444, 546
Mph1103I	ATGCAT	2 cut(s)	393, 508
MseI	TTAA	5 cut(s)	60, 93, 144, 579, 675
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	2 cut(s)	174, 191
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	2 cut(s)	174, 191
MwoI	GCNNNNNNNGC	2 cut(s)	36, 593
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
NlaIII	CATG	6 cut(s)	388, 395, 418, 457, 503, 657
NlaIV	GGNNCC	2 cut(s)	112, 259
NsiI	ATGCAT	2 cut(s)	393, 508
NspI	RCATGY	2 cut(s)	457, 657
PagI	TCATGA	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	535
PciI	ACATGT	2 cut(s)	453, 653
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	420, 481, 609
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	2 cut(s)	453, 653
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	172, 189
PspGI	CCWGG	2 cut(s)	172, 189
PspN4I	GGNNCC	2 cut(s)	112, 259
PspPI	GGNCC	3 cut(s)	55, 257, 680
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	484, 546
PsuI	RGATCY	2 cut(s)	110, 484
RsaI	GTAC	4 cut(s)	171, 298, 517, 658
RsaNI	GTAC	4 cut(s)	170, 297, 516, 657
SaqAI	TTAA	5 cut(s)	60, 93, 144, 579, 675
SatI	GCNGC	3 cut(s)	419, 480, 608
Sau3AI	GATC	9 cut(s)	110, 235, 319, 358, 472, 484, 524, 613, 717
Sau96I	GGNCC	3 cut(s)	55, 257, 680
ScrFI	CCNGG	2 cut(s)	174, 191
SduI	GDGCHC	2 cut(s)	140, 184
SfaNI	GCATC	4 cut(s)	339, 378, 480, 493
SfcI	CTRYAG	2 cut(s)	480, 542
SinI	GGWCC	3 cut(s)	55, 257, 680
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	2 cut(s)	339, 369
StyD4I	CCNGG	2 cut(s)	172, 189
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	523
TasI	AATT	1 cut(s)	639
TatI	WGTACW	1 cut(s)	656
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	5 cut(s)	60, 93, 144, 579, 675
Tru9I	TTAA	5 cut(s)	60, 93, 144, 579, 675
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	3 cut(s)	418, 479, 607
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	3 cut(s)	55, 257, 680
XagI	CCTNNNNNAGG	1 cut(s)	62
XceI	RCATGY	2 cut(s)	457, 657
XspI	CTAG	2 cut(s)	339, 369
Zsp2I	ATGCAT	2 cut(s)	393, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.