Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010294.1

Orthogroup ID

OG0001097

Physical Location & Seq

Genomic Coordinates Reverse (-)

11743 .. 12650

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010294.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgcggagtctcactggtcatacaagtccagttgaatctgtagcttttaattcagcagaagttttggtgcttgctggagcttctactggcgcaacaaaaataagggatctggaggaaacaaagatggttcgtatacttaccggacacagatccagctgttctgctgttaaatttcatccatttggtgagttctttgcttctggttccatggacactaatctgaagatctgggacattagaaagaagggatgcatccacacatacaaaggtcatactcaaggcattagtactattaagttcactcccgatggtcgatgggtagtttctggtggctttgacaatgttgtaaaggtgtgggatctaactgctgggaagatcttgcatgattttaaattccatgaacgacctattcggtctatagattttcatccccttgagtttctcttggccacaggtgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Katanin_con80 WD40

Protein Analysis

153

Amino Acids

16.98

Weight (kDa)

8.98

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11160 AT1G11160 AT1G11160 AT1G11160 AT1G61210 AT1G61210 AT1G61210
fragaria_vesca	FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490 FvH4_3g04490
malus_domestica	MD05G1322800.v1.1
prunus_persica	Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1 Prupe.4G039800_v2.0.a1
pyrus_communis	pycom05g29710 pycom2749g00050
rosa_chinensis	RchiOBHm_Chr5g0006901 RchiOBHm_Chr5g0007171 RchiOBHm_Chr5g0007181 RchiOBHm_Chr5g0007261 RchiOBHm_Chr5g0007421
rosa_laevigata	RLG00000031445 RLG00000031455
rosa_multiflora	Rmu_sc0000498.1_g000032 Rmu_sc0003826.1_g000009 Rmu_sc0004368.1_g000024 Rmu_sc0010294.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069050 Rroxscaffold_1G00069070 Rroxscaffold_1G00069100 Rroxscaffold_1G00069150 Rroxscaffold_1G00069160 Rroxscaffold_1G00069170 Rroxscaffold_6G00422980
rosa_rugosa	Rorug04G0425600 Rorug04G0426700
rosa_samantha	Rh4DG027100 Rh4DG027200 Rh5AG055100 Rh5BG052400 Rh5BG052700 Rh5BG425500 Rh5CG062400 Rh5CG449600 Rh5DG051700 Rh6AG185200
rosa_wichuraiana	Rw5G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	3 cut(s)	114, 144, 366
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	170, 392
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	3 cut(s)	44, 80, 156
AluI	AGCT	3 cut(s)	44, 80, 156
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	114, 144, 366
AoxI	GGCC	1 cut(s)	447
ApoI	RAATTY	2 cut(s)	170, 392
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	449
BccI	CCATC	3 cut(s)	118, 302, 309
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	39, 417
BglII	AGATCT	2 cut(s)	225, 375
BmcAI	AGTACT	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	239, 261
BpmI	CTGGAG	2 cut(s)	96, 131
BpuEI	CTTGAG	2 cut(s)	261, 455
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	19, 29, 91
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	4 cut(s)	175, 252, 254, 427
BseJI	GATNNNNATC	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	19, 29, 91
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	449
Bsp143I	GATC	5 cut(s)	106, 149, 225, 358, 375
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	3 cut(s)	114, 144, 366
BsrI	ACTGG	3 cut(s)	19, 29, 91
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	106, 149, 225, 358, 375
BssNAI	GTATAC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	207
Bst1107I	GTATAC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	175, 252, 254, 427
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	5 cut(s)	109, 152, 228, 361, 378
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	5 cut(s)	106, 149, 225, 358, 375
BstSFI	CTRYAG	2 cut(s)	39, 417
BstX2I	RGATCY	5 cut(s)	106, 149, 225, 358, 375
BstYI	RGATCY	5 cut(s)	106, 149, 225, 358, 375
BstZ17I	GTATAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	175, 252, 254, 427
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	208, 383, 398
CviJI	RGCY	5 cut(s)	44, 80, 156, 333, 449
CviKI_1	RGCY	5 cut(s)	44, 80, 156, 333, 449
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	5 cut(s)	108, 151, 227, 360, 377
DpnII	GATC	5 cut(s)	106, 149, 225, 358, 375
DraI	TTTAAA	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	211, 386, 401
FaiI	YATR	8 cut(s)	21, 134, 209, 262, 273, 384, 399, 419
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	207, 382, 397
FblI	GTMKAC	1 cut(s)	133
FokI	GGATG	4 cut(s)	162, 239, 261, 414
GlaI	GCGC	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	2 cut(s)	96, 131
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	211, 386, 401
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	7, 35
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	134, 300
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	110, 305
Hpy8I	GTNNAC	2 cut(s)	134, 300
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	252, 382
Hsp92II	CATG	3 cut(s)	211, 386, 401
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	106, 149, 225, 358, 375
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	2 cut(s)	239, 261
MalI	GATC	5 cut(s)	108, 151, 227, 360, 377
MboI	GATC	5 cut(s)	106, 149, 225, 358, 375
MboII	GAAGA	2 cut(s)	235, 385
MflI	RGATCY	5 cut(s)	106, 149, 225, 358, 375
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	3 cut(s)	49, 170, 392
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	4 cut(s)	48, 168, 294, 390
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	106, 149, 225, 358, 375
NlaIII	CATG	3 cut(s)	211, 386, 401
NlaIV	GGNNCC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	205
PsuI	RGATCY	5 cut(s)	106, 149, 225, 358, 375
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	48, 168, 294, 390
Sau3AI	GATC	5 cut(s)	106, 149, 225, 358, 375
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	1 cut(s)	16
SetI	ASST	7 cut(s)	46, 82, 158, 271, 354, 409, 457
SfaNI	GCATC	2 cut(s)	239, 261
SfcI	CTRYAG	2 cut(s)	39, 417
SmlI	CTYRAG	2 cut(s)	276, 434
SmoI	CTYRAG	2 cut(s)	276, 434
Sse9I	AATT	3 cut(s)	49, 170, 392
SsiI	CCGC	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	1 cut(s)	313
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	49, 170, 392
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	48, 168, 294, 390
Tru9I	TTAA	4 cut(s)	48, 168, 294, 390
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	164, 414, 416
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	170, 392
XmiI	GTMKAC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.