Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

9666831 .. 9667109

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGATGGACTTCTTGATGATGGTGGATGAATGGAATGTGGTGGTGATGGTGTTTATGGTGGTGGAAGATGGTACTTGTGATGGTGGTGATGGAGGAGATGGAGTAGTAAAGGGAGTATGGGTTTGGATTTTTTTTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

47

Amino Acids

5.28

Weight (kDa)

4.05

Isoelectric Point (pI)

10.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	55, 98
BccI	CCATC	6 cut(s)	13, 40, 62, 74, 83, 92
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 105, 117, 135
BseGI	GGATG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	72
CviQI	GTAC	1 cut(s)	72
FaiI	YATR	2 cut(s)	56, 118
FokI	GGATG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	55, 98
Hpy188III	TCNNGA	1 cut(s)	13
MboII	GAAGA	1 cut(s)	77
MnlI	CCTC	2 cut(s)	86, 132
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SetI	ASST	1 cut(s)	143
SgeI	CNNG	2 cut(s)	25, 87
TspDTI	ATGAA	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.