Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

38499391 .. 38506437

Gene Structure 7047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGATGCGGGCACAATACCAATCTCTGCGTGGCTTTAAAAAATACTATCGAGTCGCTTATCCGGAGGGGCAAGCTTCGGTGGTACCGCTCGCTAAAGAGATAGGAGCTATAGACGTGTATGGCCGGATCTTCACGATCCACGGTGGGGGCCCGAAAGAGTTACCTCCCCTAAGGAAGAAGCGAAATTCTAGTTTCGGTCATCCGGAAGTTTTCAATTTCCACAAGGCCCTACTACAAGACGAGGGCACCGGTGGAAATCCGTCACATTCTGCAGGAGGAGGAAGCCGATGCGAAGATGCCCCACGAGGAAGCCGTCACATTCGGTTCTCCCCAAATGGACCATTACATAATGTCCCGGTGGATCCATCGATCCGAACTTTGGTCCCACTGTTCCTACGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.98

Weight (kDa)

10.42

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	2 cut(s)	85, 248
AccBSI	CCGCTC	1 cut(s)	91
AccIII	TCCGGA	2 cut(s)	64, 205
AciI	CCGC	2 cut(s)	10, 89
AclWI	GGATC	5 cut(s)	133, 137, 359, 367, 372
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	148, 382
AflIII	ACRYGT	1 cut(s)	117
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	2 cut(s)	77, 110
AluI	AGCT	2 cut(s)	77, 110
AlwI	GGATC	5 cut(s)	133, 137, 359, 367, 372
Aor13HI	TCCGGA	2 cut(s)	64, 205
AoxI	GGCC	3 cut(s)	124, 151, 228
ApaI	GGGCCC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	187
AsiGI	ACCGGT	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	85
AspS9I	GGNCC	5 cut(s)	151, 152, 229, 341, 385
AsuC2I	CCSGG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	341, 385
AxyI	CCTNAGG	1 cut(s)	173
BaeGI	GKGCMC	3 cut(s)	16, 155, 251
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	2 cut(s)	85, 248
BanII	GRGCYC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	306
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	2 cut(s)	111, 273
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	341, 385
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	5 cut(s)	151, 152, 229, 341, 385
BmiI	GGNNCC	6 cut(s)	87, 152, 153, 250, 366, 387
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	281, 289
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	3 cut(s)	64, 205, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 382
Bse118I	RCCGGY	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	173
BseAI	TCCGGA	2 cut(s)	64, 205
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	12, 202
BseLI	CCNNNNNNNGG	2 cut(s)	148, 382
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	3 cut(s)	16, 155, 251
BshFI	GGCC	3 cut(s)	126, 153, 230
BshNI	GGYRCC	2 cut(s)	85, 248
BshTI	ACCGGT	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	371
BsiSI	CCGG	5 cut(s)	65, 127, 206, 252, 359
BslFI	GGGAC	2 cut(s)	341, 371
BslI	CCNNNNNNNGG	2 cut(s)	148, 382
BsmFI	GGGAC	2 cut(s)	341, 371
BsnI	GGCC	3 cut(s)	126, 153, 230
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	3 cut(s)	16, 155, 251
Bsp13I	TCCGGA	2 cut(s)	64, 205
Bsp143I	GATC	4 cut(s)	129, 138, 364, 372
BspACI	CCGC	2 cut(s)	10, 89
BspANI	GGCC	3 cut(s)	126, 153, 230
BspDI	ATCGAT	1 cut(s)	371
BspEI	TCCGGA	2 cut(s)	64, 205
BspLI	GGNNCC	6 cut(s)	87, 152, 153, 250, 366, 387
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	5 cut(s)	133, 137, 359, 367, 372
BspT107I	GGYRCC	2 cut(s)	85, 248
BsrBI	CCGCTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	4 cut(s)	129, 138, 364, 372
BssSI	CACGAG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	146, 393
BstC8I	GCNNGC	3 cut(s)	12, 75, 93
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	12, 202
BstKTI	GATC	4 cut(s)	132, 141, 367, 375
BstMBI	GATC	4 cut(s)	129, 138, 364, 372
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	111, 273
BstSLI	GKGCMC	3 cut(s)	16, 155, 251
BstX2I	RGATCY	2 cut(s)	129, 364
BstYI	RGATCY	2 cut(s)	129, 364
Bsu15I	ATCGAT	1 cut(s)	371
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	126, 153, 230
BsuTUI	ATCGAT	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	12, 202
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	12, 75, 93
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	5 cut(s)	151, 152, 229, 341, 385
ClaI	ATCGAT	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	86
CspAI	ACCGGT	1 cut(s)	251
CviJI	RGCY	8 cut(s)	36, 77, 110, 126, 153, 230, 288, 315
CviKI_1	RGCY	8 cut(s)	36, 77, 110, 126, 153, 230, 288, 315
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	4 cut(s)	131, 140, 366, 374
DpnII	GATC	4 cut(s)	129, 138, 364, 372
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	341, 385
Eco81I	CCTNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	2 cut(s)	151, 229
EcoT38I	GRGCYC	1 cut(s)	155
FaiI	YATR	3 cut(s)	113, 123, 351
FaqI	GGGAC	2 cut(s)	341, 371
FauI	CCCGC	1 cut(s)	3
FokI	GGATG	2 cut(s)	19, 189
FriOI	GRGCYC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	126, 153, 230
HapII	CCGG	5 cut(s)	65, 127, 206, 252, 359
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	5 cut(s)	65, 127, 206, 252, 359
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	3 cut(s)	65, 136, 206
HpyCH4III	ACNGT	2 cut(s)	146, 393
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	117
Kpn2I	TCCGGA	2 cut(s)	64, 205
KpnI	GGTACC	1 cut(s)	89
Kzo9I	GATC	4 cut(s)	129, 138, 364, 372
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	78, 140, 219, 261, 265, 372
LweI	GCATC	2 cut(s)	281, 289
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	162, 264, 317
MalI	GATC	4 cut(s)	131, 140, 366, 374
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	129, 138, 364, 372
MboII	GAAGA	3 cut(s)	124, 190, 308
MflI	RGATCY	2 cut(s)	129, 364
MhlI	GDGCHC	3 cut(s)	16, 155, 251
MluCI	AATT	2 cut(s)	187, 217
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	61, 177, 238, 272, 275, 302, 396
MroI	TCCGGA	2 cut(s)	64, 205
MseI	TTAA	1 cut(s)	39
MspI	CCGG	5 cut(s)	65, 127, 206, 252, 359
MspR9I	CCNGG	1 cut(s)	359
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	129, 138, 364, 372
NlaIV	GGNNCC	6 cut(s)	87, 152, 153, 250, 366, 387
NmuCI	GTSAC	2 cut(s)	264, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	251
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspN4I	GGNNCC	6 cut(s)	87, 152, 153, 250, 366, 387
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	5 cut(s)	151, 152, 229, 341, 385
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	129, 364
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	4 cut(s)	129, 138, 364, 372
Sau96I	GGNCC	5 cut(s)	151, 152, 229, 341, 385
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	3 cut(s)	16, 155, 251
SetI	ASST	5 cut(s)	79, 112, 120, 169, 407
SfaNI	GCATC	2 cut(s)	281, 289
SfcI	CTRYAG	2 cut(s)	111, 273
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	341, 385
Sse9I	AATT	2 cut(s)	187, 217
SsiI	CCGC	2 cut(s)	10, 89
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	146, 393
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	52, 371
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	187, 217
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	264, 317
Tsp45I	GTSAC	2 cut(s)	264, 317
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	341, 385
XapI	RAATTY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.