Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

42049497 .. 42060975

Gene Structure 11479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGGATAAATGGAATGGTGATAAAGATATGATGATCCTTTGGCTAATTTTGAGTGGTAGTAATGGAGTAGTAGTGGTGGTGATGGAGTTTATGGTGGTGCAAGATGCTAGTTGTGTGGTGATGATGGAGGAAATGGAGGGAGAAGTTTATGAAGATCGTGGGGAGTTCGTACTACATGGCACTAGAGGTTTTGAAGAGGAATTATGGACCGAGGTTGATATATGGAGCGCCGAGTCATTATCTACATTTTGTAATGTGCGGTTCCTCCATTTTGGGCAGTTCAAGACTATTCCAACTCACATGCCAATTTCCCGAAAAGACAATCATAATTTACTTTCTAGTCCGGAAGTCCCGAATGGTCACCAATTCAAGCTTGAGTCCCCGACCTCGGGCCGAAACGACATGTCGTGGATGCCCAAAGGACTTGAGGTCGTCCCAAATCATGACTTGTTGGCGGGGAGGCCGAGTCGGGTCCGCCTCGACTATGGCGAAGATTTGGGTGGTGCCGAGCATACGGATTCGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.04

Weight (kDa)

4.78

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	3 cut(s)	262, 458, 478
AclWI	GGATC	1 cut(s)	31
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	391, 392
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	197, 286, 373
AhdI	GACNNNNNGTC	1 cut(s)	431
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	394, 464
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	210, 394, 475
AsuHPI	GGTGA	4 cut(s)	32, 94, 133, 356
AsuII	TTCGAA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	210, 475
BanI	GGYRCC	1 cut(s)	506
BccI	CCATC	2 cut(s)	79, 121
BfaI	CTAG	3 cut(s)	111, 186, 342
BfoI	RGCGCY	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	210, 475
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	3 cut(s)	210, 394, 475
BmiI	GGNNCC	3 cut(s)	266, 476, 508
BmsI	GCATC	2 cut(s)	97, 405
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	398, 449
BsaJI	CCNNGG	2 cut(s)	213, 390
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 392
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	213, 390
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	391, 392
BshFI	GGCC	2 cut(s)	396, 466
BshNI	GGYRCC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	3 cut(s)	338, 367, 422
BslI	CCNNNNNNNGG	2 cut(s)	391, 392
BsmFI	GGGAC	3 cut(s)	338, 367, 422
BsnI	GGCC	2 cut(s)	396, 466
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	524
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	36, 157
BspACI	CCGC	3 cut(s)	262, 458, 478
BspANI	GGCC	2 cut(s)	396, 466
BspEI	TCCGGA	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	266, 476, 508
BspPI	GGATC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	213, 390
BssMI	GATC	2 cut(s)	36, 157
Bst6I	CTCTTC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	524
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	420
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	39, 160
BstMBI	GATC	2 cut(s)	36, 157
BstNSI	RCATGY	2 cut(s)	307, 409
BstPI	GGTNACC	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	396, 466
BtsCI	GGATG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	210, 394, 475
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	4 cut(s)	179, 304, 406, 446
CviJI	RGCY	4 cut(s)	46, 376, 396, 466
CviKI_1	RGCY	4 cut(s)	46, 376, 396, 466
CviQI	GTAC	1 cut(s)	173
DpnI	GATC	2 cut(s)	38, 159
DpnII	GATC	2 cut(s)	36, 157
DriI	GACNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	210, 475
Eco88I	CYCGRG	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
FaeI	CATG	4 cut(s)	182, 307, 409, 449
FaqI	GGGAC	3 cut(s)	338, 367, 422
FatI	CATG	4 cut(s)	178, 303, 405, 445
FauI	CCCGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	427
FspBI	CTAG	3 cut(s)	111, 186, 342
GlaI	GCGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	396, 466
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	182, 307, 409, 449
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	236, 380, 469, 521
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	4 cut(s)	32, 94, 133, 356
Hpy188III	TCNNGA	5 cut(s)	286, 315, 347, 355, 446
HpyCH4V	TGCA	1 cut(s)	103
Hsp92II	CATG	4 cut(s)	182, 307, 409, 449
HspAI	GCGC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	36, 157
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	1 cut(s)	360
LweI	GCATC	2 cut(s)	97, 405
MaeI	CTAG	3 cut(s)	111, 186, 342
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	38, 159
MboI	GATC	2 cut(s)	36, 157
MboII	GAAGA	3 cut(s)	167, 209, 506
MluCI	AATT	5 cut(s)	48, 203, 309, 331, 368
MlyI	GAGTC	3 cut(s)	245, 389, 478
MmeI	TCCRAC	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	346
MspI	CCGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	36, 157
NlaIII	CATG	4 cut(s)	182, 307, 409, 449
NlaIV	GGNNCC	3 cut(s)	266, 476, 508
NmeAIII	GCCGAG	2 cut(s)	259, 492
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	2 cut(s)	307, 409
NspV	TTCGAA	1 cut(s)	524
PagI	TCATGA	1 cut(s)	445
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	521
PleI	GAGTC	3 cut(s)	244, 388, 477
PpsI	GAGTC	3 cut(s)	244, 388, 477
PscI	ACATGT	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	266, 476, 508
PspPI	GGNCC	3 cut(s)	210, 394, 475
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	36, 157
Sau96I	GGNCC	3 cut(s)	210, 394, 475
SchI	GAGTC	3 cut(s)	245, 389, 478
SetI	ASST	5 cut(s)	193, 219, 378, 392, 435
SfaNI	GCATC	2 cut(s)	97, 405
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	2 cut(s)	210, 475
SmlI	CTYRAG	2 cut(s)	377, 428
SmoI	CTYRAG	2 cut(s)	377, 428
Sse9I	AATT	5 cut(s)	48, 203, 309, 331, 368
SsiI	CCGC	3 cut(s)	262, 458, 478
SspMI	CTAG	3 cut(s)	111, 186, 342
TaqI	TCGA	2 cut(s)	483, 524
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	48, 203, 309, 331, 368
TfiI	GAWTC	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	210, 475
XceI	RCATGY	2 cut(s)	307, 409
XspI	CTAG	3 cut(s)	111, 186, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.