Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

55776685 .. 55781145

Gene Structure 4461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGGCCTAGTCGAAGCCGACCCGAAACATATGGGGATAACGTCGACGAGAGCGAAGGGTCTCCAATCCGCCCCGTGGTCGTGGATGAGCCACGAAAAAGGGAGTGGGTCCATGATCGAATCGGTCACCCCACAACTCGAGCAAAAGAAGCAGGAGTCCTCGTCCGCTCTAGTCGTTATGTGAGTGGTCGGCCCCACCACGAAGAAAGGGCACAACAAAGCCCGAGAACACCACCCCCACCCCGATACGAGCTATTTACTATCCTAAATGCTACGTACGAAATAATTGGGAATGAGAACAAGGATGAGATACCCGGACCACCGCCTAGGAAGTTCCCAAAGAGCAAACTTACCCAAAAAGATACAGGAAGATTCTCGTATTTATCATCGGGATGCCGGCACAATACCAACCTCTCGCATGGCTCTAAAAAACATGATCGAATCACTCATTCGAAGGGTAAGCTGCAACGGTACCTGCCCGCCAAAGAACAAGGGGCTATCAACGTATATGGCCGCATCTTTACGATCCATGGTGGGGCTCGAAGGACCTACCTCCCCGCAGAGGAAGAGAAATTACAATTTCAGCCACCCGAAAGTCTTCAATTTCCAAAGAGACCCGCAGCAGACAACGACACTCGGGTGGAAGTGTGTCACTTTTTCGCAGAAGAGGAGGCCGACCTCGGATGCCTCATGATGACCTTCCGCATCAAGTTCCAAATGGACCACTATATAGTCTCCCGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

248

Amino Acids

28.59

Weight (kDa)

9.47

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	471
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	8 cut(s)	70, 166, 323, 480, 514, 558, 618, 703
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	511
AfaI	GTAC	2 cut(s)	278, 473
AfiI	CCNNNNNNNGG	3 cut(s)	76, 535, 562
AgsI	TTSAA	1 cut(s)	602
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	2 cut(s)	253, 463
AluI	AGCT	2 cut(s)	253, 463
Alw26I	GTCTC	3 cut(s)	66, 607, 739
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	3 cut(s)	138, 223, 636
AoxI	GGCC	4 cut(s)	5, 191, 511, 672
ApeKI	GCWGC	2 cut(s)	463, 620
Asp700I	GAANNNNTTC	1 cut(s)	597
Asp718I	GGTACC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	5 cut(s)	109, 192, 317, 546, 721
AsuC2I	CCSGG	2 cut(s)	315, 739
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	452
AvaI	CYCGRG	3 cut(s)	138, 223, 636
AvaII	GGWCC	4 cut(s)	109, 317, 546, 721
AvrII	CCTAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	541
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	450, 632
BcnI	CCSGG	2 cut(s)	315, 739
BcoDI	GTCTC	3 cut(s)	66, 607, 739
BfaI	CTAG	3 cut(s)	9, 171, 327
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	464, 514, 621
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	3 cut(s)	465, 515, 622
Bme1390I	CCNGG	2 cut(s)	315, 739
Bme18I	GGWCC	4 cut(s)	109, 317, 546, 721
BmeT110I	CYCGRG	3 cut(s)	138, 223, 636
BmgT120I	GGNCC	5 cut(s)	109, 192, 317, 546, 721
BmiI	GGNNCC	3 cut(s)	110, 194, 473
BmrFI	CCNGG	2 cut(s)	315, 739
BmsI	GCATC	4 cut(s)	383, 525, 674, 714
BpiI	GAAGAC	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	315, 739
BsaAI	YACGTR	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	66, 607
BsaJI	CCNNGG	4 cut(s)	75, 326, 529, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 535, 562
Bse118I	RCCGGY	1 cut(s)	396
BseDI	CCNNGG	4 cut(s)	75, 326, 529, 679
BseGI	GGATG	4 cut(s)	91, 310, 398, 689
BseLI	CCNNNNNNNGG	3 cut(s)	76, 535, 562
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	450, 632
BshFI	GGCC	4 cut(s)	7, 193, 513, 674
BshNI	GGYRCC	1 cut(s)	471
BsiHKCI	CYCGRG	3 cut(s)	138, 223, 636
BsiSI	CCGG	3 cut(s)	315, 397, 739
BsiWI	CGTACG	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	76, 535, 562
BsmAI	GTCTC	3 cut(s)	66, 607, 739
BsnI	GGCC	4 cut(s)	7, 193, 513, 674
Bso31I	GGTCTC	2 cut(s)	66, 607
BsoBI	CYCGRG	3 cut(s)	138, 223, 636
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	214, 541
Bsp143I	GATC	3 cut(s)	115, 436, 525
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	8 cut(s)	70, 166, 323, 480, 514, 558, 618, 703
BspANI	GGCC	4 cut(s)	7, 193, 513, 674
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	110, 194, 473
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	520
BspT104I	TTCGAA	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	2 cut(s)	66, 607
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	4 cut(s)	75, 326, 529, 679
BssMI	GATC	3 cut(s)	115, 436, 525
BssT1I	CCWWGG	2 cut(s)	326, 529
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	561, 660
BstBAI	YACGTR	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	398, 480
BstDSI	CCRYGG	2 cut(s)	75, 529
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	91, 310, 398, 689
BstKTI	GATC	3 cut(s)	118, 439, 528
BstMAI	GTCTC	3 cut(s)	66, 607, 739
BstMBI	GATC	3 cut(s)	115, 436, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	313, 737
BstSLI	GKGCMC	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	450, 632
BstV2I	GAAGAC	1 cut(s)	590
BsuRI	GGCC	4 cut(s)	7, 193, 513, 674
BtgI	CCRYGG	2 cut(s)	75, 529
BtsCI	GGATG	4 cut(s)	91, 310, 398, 689
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	398, 480
CciI	TCATGA	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	5 cut(s)	109, 192, 317, 546, 721
Csp6I	GTAC	2 cut(s)	277, 472
CviAII	CATG	5 cut(s)	113, 419, 434, 530, 691
CviQI	GTAC	2 cut(s)	277, 472
DpnI	GATC	3 cut(s)	117, 438, 527
DpnII	GATC	3 cut(s)	115, 436, 525
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	561, 660
EarI	CTCTTC	2 cut(s)	561, 660
EciI	GGCGGA	1 cut(s)	59
Eco105I	TACGTA	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	326, 529
Eco147I	AGGCCT	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	541
Eco31I	GGTCTC	2 cut(s)	66, 607
Eco47I	GGWCC	4 cut(s)	109, 317, 546, 721
Eco88I	CYCGRG	3 cut(s)	138, 223, 636
Eco91I	GGTNACC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	326, 529
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	326, 529
FaeI	CATG	5 cut(s)	116, 422, 437, 533, 694
FatI	CATG	5 cut(s)	112, 418, 433, 529, 690
FauI	CCCGC	3 cut(s)	487, 565, 625
FauNDI	CATATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	464, 514, 621
FokI	GGATG	4 cut(s)	98, 317, 405, 696
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	3 cut(s)	464, 514, 621
FspBI	CTAG	3 cut(s)	9, 171, 327
GluI	GCNGC	3 cut(s)	464, 514, 621
HaeIII	GGCC	4 cut(s)	7, 193, 513, 674
HapII	CCGG	3 cut(s)	315, 397, 739
Hin1II	CATG	5 cut(s)	116, 422, 437, 533, 694
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	120, 156, 372, 441
HpaII	CCGG	3 cut(s)	315, 397, 739
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	683
Hpy188III	TCNNGA	2 cut(s)	390, 691
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	4 cut(s)	50, 448, 537, 709
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	3 cut(s)	42, 275, 504
HpyCH4V	TGCA	1 cut(s)	466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpySE526I	ACGT	3 cut(s)	42, 275, 504
Hsp92II	CATG	5 cut(s)	116, 422, 437, 533, 694
KpnI	GGTACC	1 cut(s)	475
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	115, 436, 525
LpnPI	CCDG	5 cut(s)	138, 328, 351, 410, 488
Lsp1109I	GCAGC	2 cut(s)	450, 632
LweI	GCATC	4 cut(s)	383, 525, 674, 714
MaeI	CTAG	3 cut(s)	9, 171, 327
MaeII	ACGT	3 cut(s)	42, 275, 504
MaeIII	GTNAC	2 cut(s)	125, 650
MalI	GATC	3 cut(s)	117, 438, 527
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	115, 436, 525
MboII	GAAGA	5 cut(s)	215, 381, 578, 590, 677
MhlI	GDGCHC	2 cut(s)	214, 541
MluCI	AATT	4 cut(s)	285, 572, 578, 602
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	170, 422, 556, 563, 661, 664, 689, 698
MroNI	GCCGGC	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	597
MslI	CAYNNNNRTG	2 cut(s)	391, 638
MspI	CCGG	3 cut(s)	315, 397, 739
MspR9I	CCNGG	2 cut(s)	315, 739
MwoI	GCNNNNNNNGC	1 cut(s)	149
NaeI	GCCGGC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	315, 739
NcoI	CCATGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	3 cut(s)	115, 436, 525
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	5 cut(s)	116, 422, 437, 533, 694
NlaIV	GGNNCC	3 cut(s)	110, 194, 473
NmuCI	GTSAC	2 cut(s)	125, 650
NspV	TTCGAA	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	690
PceI	AGGCCT	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	120, 372, 441
Pfl23II	CGTACG	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	465, 515, 622
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	125
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	110, 194, 473
PspPI	GGNCC	5 cut(s)	109, 192, 317, 546, 721
PspPPI	RGGWCCY	1 cut(s)	546
PspXI	VCTCGAGB	1 cut(s)	138
RsaI	GTAC	2 cut(s)	278, 473
RsaNI	GTAC	2 cut(s)	277, 472
RseI	CAYNNNNRTG	2 cut(s)	391, 638
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	3 cut(s)	464, 514, 621
Sau3AI	GATC	3 cut(s)	115, 436, 525
Sau96I	GGNCC	5 cut(s)	109, 192, 317, 546, 721
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	315, 739
SduI	GDGCHC	2 cut(s)	214, 541
SfaNI	GCATC	4 cut(s)	383, 525, 674, 714
Sfr274I	CTCGAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	452
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	4 cut(s)	109, 317, 546, 721
SlaI	CTCGAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	391, 638
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SnaBI	TACGTA	1 cut(s)	276
Sse9I	AATT	4 cut(s)	285, 572, 578, 602
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	8 cut(s)	70, 166, 323, 480, 514, 558, 618, 703
SspMI	CTAG	3 cut(s)	9, 171, 327
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	313, 737
StyI	CCWWGG	2 cut(s)	326, 529
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	3 cut(s)	45, 278, 507
TaqI	TCGA	7 cut(s)	13, 45, 118, 139, 439, 452, 541
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	4 cut(s)	285, 572, 578, 602
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	3 cut(s)	120, 372, 441
TseFI	GTSAC	2 cut(s)	125, 650
TseI	GCWGC	2 cut(s)	463, 620
Tsp45I	GTSAC	2 cut(s)	125, 650
VpaK11BI	GGWCC	4 cut(s)	109, 317, 546, 721
XhoI	CTCGAG	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	9, 171, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.