Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

43354713 .. 43358147

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCCTCATTCAATGGCCACGACTTCTTAAAGGATGGTGCCTTTCTGGCTAGTGAAGAAGAGAAAGTTGGTTTGAGGTGTGGTTTTAGATTCTCCATCCCCTCTTTCATATATGTGTTTTGGGGTATTTTGGTTACAGAGTTACTCGGCGGCTTATGGCAACTTGGAGACATTGTCGGGGAAGCTTTGAGTTGGTTCTACGAGCCGTCGGCCGGTTCGGTAAGGAATTTCAAGGAGCTCGCGGACAAGTTCGTAGCTCGATTCATCTTACGTACCGATGGGATACATACCCCAAAGGGGCTGCTAAAGATTCAACGGGGGGAGAATGAAACTTTGAAGTCCTTCGTTAACCGATGGCGGGACCCAACCTCTAAGTGCGGGACCTTAACAAGGAACCGGCCGAGTTGGCTTTCGGGGAGGGGCCTAAGGCGCGGAGAGTTTCTCTACGGGATTAACCATTACCCCCCGGCTAGCTATGACGAGCTAATAGCTACGGCCATCGTGCACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

8.95

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccII	CGCG	2 cut(s)	242, 432
AciI	CCGC	5 cut(s)	150, 242, 358, 378, 432
AcoI	YGGCCR	4 cut(s)	16, 210, 398, 495
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	4 cut(s)	212, 297, 358, 390
AgsI	TTSAA	4 cut(s)	13, 232, 314, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	6 cut(s)	185, 238, 257, 474, 484, 491
AluI	AGCT	6 cut(s)	185, 238, 257, 474, 484, 491
Alw21I	GWGCWC	2 cut(s)	240, 507
Alw26I	GTCTC	1 cut(s)	162
Alw44I	GTGCAC	1 cut(s)	503
AoxI	GGCC	5 cut(s)	16, 210, 398, 421, 495
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	361, 381, 421
AsuC2I	CCSGG	1 cut(s)	467
AsuNHI	GCTAGC	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	361, 381
AxyI	CCTNAGG	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	240, 507
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	5 cut(s)	29, 104, 272, 348, 506
BceAI	ACGGC	2 cut(s)	190, 510
BciVI	GTATCC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	51, 471
BfuI	GTATCC	1 cut(s)	276
BglI	GCCNNNNNGGC	2 cut(s)	47, 406
BisI	GCNGC	2 cut(s)	151, 302
BlsI	GCNGC	2 cut(s)	152, 303
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	2 cut(s)	361, 381
BmgT120I	GGNCC	3 cut(s)	361, 381, 421
BmiI	GGNNCC	6 cut(s)	40, 362, 363, 382, 395, 422
BmrFI	CCNGG	1 cut(s)	467
BmtI	GCTAGC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpuMI	CCSGG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 297, 358, 390
Bse118I	RCCGGY	2 cut(s)	212, 396
Bse21I	CCTNAGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	40, 96
BseLI	CCNNNNNNNGG	4 cut(s)	212, 297, 358, 390
BseSI	GKGCMC	1 cut(s)	507
BseX3I	CGGCCG	2 cut(s)	210, 398
BseXI	GCAGC	1 cut(s)	288
Bsh1236I	CGCG	2 cut(s)	242, 432
Bsh1285I	CGRYCG	2 cut(s)	213, 401
BshFI	GGCC	5 cut(s)	18, 212, 400, 423, 497
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	2 cut(s)	213, 401
BsiHKAI	GWGCWC	2 cut(s)	240, 507
BsiSI	CCGG	3 cut(s)	213, 397, 467
BslFI	GGGAC	2 cut(s)	374, 394
BslI	CCNNNNNNNGG	4 cut(s)	212, 297, 358, 390
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	374, 394
BsnI	GGCC	5 cut(s)	18, 212, 400, 423, 497
Bsp1286I	GDGCHC	2 cut(s)	240, 507
BspACI	CCGC	5 cut(s)	150, 242, 358, 378, 432
BspANI	GGCC	5 cut(s)	18, 212, 400, 423, 497
BspFNI	CGCG	2 cut(s)	242, 432
BspLI	GGNNCC	6 cut(s)	40, 362, 363, 382, 395, 422
BspOI	GCTAGC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	212, 396
BssAI	RCCGGY	2 cut(s)	212, 396
BssECI	CCNNGG	1 cut(s)	465
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	240, 472, 507
BstDEI	CTNAG	3 cut(s)	372, 425, 510
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	40, 96
BstFNI	CGCG	2 cut(s)	242, 432
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	162
BstMCI	CGRYCG	2 cut(s)	213, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 406, 429
BstSCI	CCNGG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	507
BstSNI	TACGTA	1 cut(s)	272
BstUI	CGCG	2 cut(s)	242, 432
BstV1I	GCAGC	1 cut(s)	288
BstZI	CGGCCG	2 cut(s)	210, 398
Bsu36I	CCTNAGG	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	18, 212, 400, 423, 497
BtsCI	GGATG	2 cut(s)	40, 96
Cac8I	GCNNGC	3 cut(s)	240, 472, 507
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	2 cut(s)	212, 396
Cfr13I	GGNCC	3 cut(s)	361, 381, 421
Csp6I	GTAC	1 cut(s)	273
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	3 cut(s)	372, 425, 510
EaeI	YGGCCR	4 cut(s)	16, 210, 398, 495
EagI	CGGCCG	2 cut(s)	210, 398
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	238
EclXI	CGGCCG	2 cut(s)	210, 398
Eco105I	TACGTA	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	361, 381
Eco52I	CGGCCG	2 cut(s)	210, 398
Eco53kI	GAGCTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO109I	RGGNCCY	3 cut(s)	361, 381, 421
EcoT38I	GRGCYC	1 cut(s)	240
FaiI	YATR	6 cut(s)	110, 112, 114, 157, 288, 477
FaqI	GGGAC	2 cut(s)	374, 394
FauI	CCCGC	2 cut(s)	351, 371
Fnu4HI	GCNGC	2 cut(s)	151, 302
FokI	GGATG	2 cut(s)	47, 83
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	151, 302
FspBI	CTAG	2 cut(s)	51, 471
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	2 cut(s)	151, 302
HaeIII	GGCC	5 cut(s)	18, 212, 400, 423, 497
HapII	CCGG	3 cut(s)	213, 397, 467
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	90, 261, 310
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	3 cut(s)	213, 397, 467
Hpy166II	GTNNAC	2 cut(s)	349, 505
Hpy8I	GTNNAC	2 cut(s)	349, 505
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 406, 429
HpyF3I	CTNAG	3 cut(s)	372, 425, 510
HpySE526I	ACGT	1 cut(s)	271
HspAI	GCGC	1 cut(s)	430
KflI	GGGWCCC	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	32, 226, 410, 480
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	51, 471
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	133, 141
MboII	GAAGA	2 cut(s)	68, 71
MhlI	GDGCHC	2 cut(s)	240, 507
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	18
MnlI	CCTC	5 cut(s)	16, 69, 112, 379, 411
Mox20I	TGGCCA	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	4 cut(s)	29, 348, 386, 453
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	3 cut(s)	213, 397, 467
MspR9I	CCNGG	1 cut(s)	467
MvnI	CGCG	2 cut(s)	242, 432
MwoI	GCNNNNNNNGC	3 cut(s)	47, 406, 429
NciI	CCSGG	1 cut(s)	467
NheI	GCTAGC	1 cut(s)	470
NlaIV	GGNNCC	6 cut(s)	40, 362, 363, 382, 395, 422
NmeAIII	GCCGAG	2 cut(s)	126, 426
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	90, 261, 310
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	152, 303
Ppu21I	YACGTR	1 cut(s)	272
PpuMI	RGGWCCY	2 cut(s)	361, 381
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	2 cut(s)	361, 381
PspN4I	GGNNCC	6 cut(s)	40, 362, 363, 382, 395, 422
PspPI	GGNCC	3 cut(s)	361, 381, 421
PspPPI	RGGWCCY	2 cut(s)	361, 381
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	29, 348, 386, 453
SatI	GCNGC	2 cut(s)	151, 302
Sau96I	GGNCC	3 cut(s)	361, 381, 421
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	240, 507
SinI	GGWCC	2 cut(s)	361, 381
SmiMI	CAYNNNNRTG	1 cut(s)	113
SnaBI	TACGTA	1 cut(s)	272
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	5 cut(s)	150, 242, 358, 378, 432
SspMI	CTAG	2 cut(s)	51, 471
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	465
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	259
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	90, 261, 310
Tru1I	TTAA	4 cut(s)	29, 348, 386, 453
Tru9I	TTAA	4 cut(s)	29, 348, 386, 453
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	97, 253, 342
Tth111I	GACNNNGTC	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	361, 381
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	51, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.