Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

91533186 .. 91534927

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGATCCTTGAATCCTTCTTGATGGTGGAATGGATGGATGATAAGCTTCTAGATGGTAATGATGAATGGAATGGTGATGAAGATATGATGCTCTTTTGGCCAACTTTGAGTGGTAGTGATGGAGTAATGGTGGTGGTGATGGAGGTTGAGGAATATGGATATTATGGGTTTGGATTTTGGGAGGTGGAGATGGAGGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

67

Amino Acids

7.9

Weight (kDa)

4.05

Isoelectric Point (pI)

15.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	86, 148
BalI	TGGCCA	1 cut(s)	100
BccI	CCATC	6 cut(s)	16, 28, 47, 113, 133, 184
BfaI	CTAG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
BseGI	GGATG	2 cut(s)	39, 43
BshFI	GGCC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	100
BssMI	GATC	1 cut(s)	3
BstF5I	GGATG	2 cut(s)	39, 43
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	39, 43
CviJI	RGCY	2 cut(s)	46, 100
CviKI_1	RGCY	2 cut(s)	46, 100
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	98
FaiI	YATR	4 cut(s)	86, 156, 165, 202
FokI	GGATG	2 cut(s)	46, 50
FspBI	CTAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	86, 148
Hpy188III	TCNNGA	2 cut(s)	19, 50
HpyAV	CCTTC	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	3
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	50
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	100
MluNI	TGGCCA	1 cut(s)	100
MnlI	CCTC	4 cut(s)	136, 142, 175, 187
Mox20I	TGGCCA	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	4 cut(s)	48, 147, 186, 198
SfaNI	GCATC	1 cut(s)	78
SgeI	CNNG	3 cut(s)	20, 31, 62
SspMI	CTAG	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	78, 93
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.