Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

13123670 .. 13134917

Gene Structure 11248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAGTTTATGGTGGTGGAAGATGGTAGTTGTGGTGGTGATGATGGAGTAGATTGGGTATTGTGGGTTTGGATTTTGGGAGGTGGAGATGGAGGTTTTGTGAAGGAGATGAAGAGAGAAATCAGATGTAATGGGATGAAGGAATTGGTCCTTGAGATTGAGAAGTTGATTGGGTCTGTTGAGATGATGTTGTTGCCGAATTCGGTGGTCATCGGAGAAAGTGGCCGCCGGCGCGTGGTCCCCACCCGCCGCTACGTAGGTGGCGCAGAAGGAAGATTTGAACTTGGAGCTTTGTTTTCCATTTTGGAGACAAACATTATTGGCGTAATTAGTTTGGTGATCAAACATTTTGCGGTTTTGGTGCCTAAAATTCAAAAAACTGGAGATTTGGTCCGGTTGTGGGTCTCGGCCAAAGTACCACACCAACCCAACGAAGTCCGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.37

Weight (kDa)

7.79

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccII	CGCG	1 cut(s)	234
AciI	CCGC	5 cut(s)	226, 247, 250, 353, 439
AcoI	YGGCCR	2 cut(s)	223, 408
AcsI	RAATTY	2 cut(s)	199, 369
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	235, 400
AgsI	TTSAA	2 cut(s)	281, 374
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	302, 409
AoxI	GGCC	2 cut(s)	223, 408
ApoI	RAATTY	2 cut(s)	199, 369
AspLEI	GCGC	2 cut(s)	234, 266
AspS9I	GGNCC	3 cut(s)	148, 238, 391
AsuHPI	GGTGA	2 cut(s)	50, 349
AvaII	GGWCC	3 cut(s)	148, 238, 391
BanI	GGYRCC	1 cut(s)	361
BccI	CCATC	3 cut(s)	17, 38, 83
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	302, 409
BfaI	CTAG	1 cut(s)	445
BisI	GCNGC	2 cut(s)	226, 250
BlsI	GCNGC	2 cut(s)	227, 251
Bme18I	GGWCC	3 cut(s)	148, 238, 391
BmgT120I	GGNCC	3 cut(s)	148, 238, 391
BmiI	GGNNCC	2 cut(s)	240, 363
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 400
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	235, 400
BseNI	ACTGG	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	225, 410
BshNI	GGYRCC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	229, 394
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	235, 400
BsmAI	GTCTC	2 cut(s)	302, 409
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	225, 410
Bso31I	GGTCTC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	5 cut(s)	226, 247, 250, 353, 439
BspANI	GGCC	2 cut(s)	225, 410
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	240, 363
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	234, 266
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	2 cut(s)	302, 409
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSNI	TACGTA	1 cut(s)	256
BstUI	CGCG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	225, 410
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	2 cut(s)	234, 266
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	3 cut(s)	148, 238, 391
Csp6I	GTAC	1 cut(s)	416
CviJI	RGCY	3 cut(s)	225, 290, 410
CviKI_1	RGCY	3 cut(s)	225, 290, 410
CviQI	GTAC	1 cut(s)	416
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EaeI	YGGCCR	2 cut(s)	223, 408
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	428
Eco105I	TACGTA	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	3 cut(s)	148, 238, 391
EcoRI	GAATTC	1 cut(s)	199
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	224
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	226, 250
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	226, 250
FspBI	CTAG	1 cut(s)	445
GlaI	GCGC	2 cut(s)	233, 265
GluI	GCNGC	2 cut(s)	226, 250
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	225, 410
HapII	CCGG	2 cut(s)	229, 394
HhaI	GCGC	2 cut(s)	234, 266
Hin6I	GCGC	2 cut(s)	232, 264
HinP1I	GCGC	2 cut(s)	232, 264
HpaII	CCGG	2 cut(s)	229, 394
HphI	GGTGA	2 cut(s)	50, 349
Hpy188I	TCNGA	2 cut(s)	125, 215
HpyAV	CCTTC	3 cut(s)	97, 133, 263
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	255
HspAI	GCGC	2 cut(s)	232, 264
KroI	GCCGGC	1 cut(s)	228
KroNI	GCCGGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	3 cut(s)	242, 366, 407
MaeI	CTAG	1 cut(s)	445
MaeII	ACGT	1 cut(s)	255
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	3 cut(s)	32, 124, 285
MluCI	AATT	4 cut(s)	143, 199, 327, 369
MnlI	CCTC	2 cut(s)	74, 86
MreI	CGCCGGCG	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	228
MspI	CCGG	2 cut(s)	229, 394
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	231
NaeI	GCCGGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	339
NgoMIV	GCCGGC	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	240, 363
NmeAIII	GCCGAG	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	227, 251
Ppu21I	YACGTR	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	240, 363
PspPI	GGNCC	3 cut(s)	148, 238, 391
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SatI	GCNGC	2 cut(s)	226, 250
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	3 cut(s)	148, 238, 391
SetI	ASST	5 cut(s)	85, 97, 258, 262, 292
SgeI	CNNG	9 cut(s)	164, 241, 245, 247, 258, 296, 393, 406, 418
SgrAI	CRCCGGYG	1 cut(s)	228
SinI	GGWCC	3 cut(s)	148, 238, 391
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SnaBI	TACGTA	1 cut(s)	256
Sse9I	AATT	4 cut(s)	143, 199, 327, 369
SsiI	CCGC	5 cut(s)	226, 247, 250, 353, 439
SspMI	CTAG	1 cut(s)	445
TaiI	ACGT	1 cut(s)	258
TasI	AATT	4 cut(s)	143, 199, 327, 369
TauI	GCSGC	2 cut(s)	228, 252
TspDTI	ATGAA	3 cut(s)	17, 125, 152
VpaK11BI	GGWCC	3 cut(s)	148, 238, 391
XapI	RAATTY	2 cut(s)	199, 369
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.