Rmu_sc0003226.1_g000060

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
Physical Location & Seq
Reverse (-)
247195 .. 249233
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000060.1.cds

Sequence Viewer

Length: 1026 bp
atgaagtttatggtggtggaagatggtagttgtggtggtgatgatggagtagattgggtattgtgggtttggattttgggaggtggagatggaggttttgtgaaggagatgaagagagaaatcagatgtaatgggatgaaggaattctacacggatgaggtgtgttgtaacatgttccaagagaccttgtcagaggaggctttgagtttgttctatgaactgctggccagttctgtacagcagggagaaaatgaaacattaaagccttttgtcaacaggtggcaagcggctactgccaggtgtcaagaccttaataaggaattggcggagttggctttcaagaggggcctaagacccggagacttcctctacgggattaatcatcatcccccagctagctacgacgagctgatggccacagccatcagacacgctcaggccgagttcgaaacatatggggacaacatcagacccaaaaagagtctcaccaacttggtcccggaacgatcaccccacaaaaggcacaggaagtcctcgtccagatccaatggatattcaaataatcggtcccaccataaagaccggacgcaagaccggacacaacagaaccccaagccaccacctcctccccggtatgaagtattcatagtactgaatgcctcgtacgaaacaatttggaacgagaacacatcagagatatcgggaccccatccaagaaaattccggaagagcaagcttacacagcaggataccggtacgtactgtacctatcacgaggatgcaagacgcaataccaacctctacatggctctaaaaaatactatcgagttactcattcagaagggaaaacttcagcggtacctccccgccaaggaaaaaggagccatcgatgtatacggtcgaatcctcacgatccatggaggggggcccgaaggatatacctcctcgaaggagaaagcgaagatccagttttggccatccggaagtcttcaatttccacagtgccccctcggcaaagaagcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

341

Amino Acids

38.9

Weight (kDa)

8.68

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 858
AccI GTMKAC 1 cut(s) 894
AccIII TCCGGA 2 cut(s) 723, 980
AciI CCGC 4 cut(s) 287, 326, 856, 867
AclWI GGATC 3 cut(s) 537, 907, 958
AcoI YGGCCR 3 cut(s) 225, 414, 974
AcsI RAATTY 2 cut(s) 143, 719
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 7 cut(s) 237, 651, 665, 757, 761, 766, 860
AfiI CCNNNNNNNGG 5 cut(s) 316, 519, 805, 871, 922
AflIII ACRYGT 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 3 cut(s) 340, 558, 992
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 4 cut(s) 395, 399, 409, 736
AluI AGCT 4 cut(s) 395, 399, 409, 736
Alw26I GTCTC 3 cut(s) 176, 354, 488
AlwI GGATC 3 cut(s) 537, 907, 958
Aor13HI TCCGGA 2 cut(s) 723, 980
AoxI GGCC 6 cut(s) 225, 346, 414, 438, 926, 974
ApaI GGGCCC 1 cut(s) 930
ApoI RAATTY 2 cut(s) 143, 719
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AseI ATTAAT 1 cut(s) 378
AsiGI ACCGGT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 858
AspS9I GGNCC 6 cut(s) 346, 496, 567, 704, 926, 927
AsuC2I CCSGG 3 cut(s) 357, 500, 631
AsuHPI GGTGA 3 cut(s) 50, 478, 501
AsuII TTCGAA 1 cut(s) 447
AsuNHI GCTAGC 1 cut(s) 395
AvaII GGWCC 3 cut(s) 496, 567, 704
BaeGI GKGCMC 2 cut(s) 930, 1007
BalI TGGCCA 3 cut(s) 227, 416, 976
BanI GGYRCC 1 cut(s) 858
BanII GRGCYC 1 cut(s) 930
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BauI CACGAG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 980
BccI CCATC 8 cut(s) 17, 38, 83, 406, 431, 717, 893, 985
BciT130I CCWGG 1 cut(s) 298
BciVI GTATCC 1 cut(s) 742
BcnI CCSGG 3 cut(s) 357, 500, 631
BcoDI GTCTC 3 cut(s) 176, 354, 488
BfaI CTAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 1011
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 298, 357, 500, 631
Bme18I GGWCC 3 cut(s) 496, 567, 704
BmgT120I GGNCC 6 cut(s) 346, 496, 567, 704, 926, 927
BmiI GGNNCC 9 cut(s) 347, 498, 569, 705, 706, 860, 883, 927, 928
BmrFI CCNGG 4 cut(s) 298, 357, 500, 631
BmsI GCATC 1 cut(s) 769
BmtI GCTAGC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 351, 383
Bpu10I CCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 447
BpuMI CCSGG 3 cut(s) 357, 500, 631
Bsa29I ATCGAT 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 759
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 629, 870, 916, 1009
BsaWI WCCGGW 5 cut(s) 582, 594, 723, 752, 980
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 5 cut(s) 316, 519, 805, 871, 922
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 2 cut(s) 228, 967
BseAI TCCGGA 2 cut(s) 723, 980
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 4 cut(s) 629, 870, 916, 1009
BseGI GGATG 6 cut(s) 141, 160, 385, 709, 784, 977
BseLI CCNNNNNNNGG 5 cut(s) 316, 519, 805, 871, 922
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 2 cut(s) 228, 967
BseRI GAGGAG 3 cut(s) 209, 615, 934
BseSI GKGCMC 2 cut(s) 930, 1007
BseYI CCCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 6 cut(s) 227, 348, 416, 440, 928, 976
BshNI GGYRCC 1 cut(s) 858
BshTI ACCGGT 1 cut(s) 752
BshVI ATCGAT 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 901
BsiSI CCGG 8 cut(s) 357, 500, 583, 595, 631, 724, 753, 981
BsiWI CGTACG 1 cut(s) 663
BslFI GGGAC 4 cut(s) 473, 482, 553, 717
BslI CCNNNNNNNGG 5 cut(s) 316, 519, 805, 871, 922
BsmAI GTCTC 3 cut(s) 176, 354, 488
BsmFI GGGAC 4 cut(s) 473, 482, 553, 717
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 6 cut(s) 227, 348, 416, 440, 928, 976
Bso31I GGTCTC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 447
Bsp120I GGGCCC 1 cut(s) 926
Bsp1286I GDGCHC 2 cut(s) 930, 1007
Bsp13I TCCGGA 2 cut(s) 723, 980
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 4 cut(s) 506, 542, 912, 963
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 4 cut(s) 287, 326, 856, 867
BspANI GGCC 6 cut(s) 227, 348, 416, 440, 928, 976
BspCNI CTCAG 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 888
BspEI TCCGGA 2 cut(s) 723, 980
BspLI GGNNCC 9 cut(s) 347, 498, 569, 705, 706, 860, 883, 927, 928
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 3 cut(s) 537, 907, 958
BspQI GCTCTTC 1 cut(s) 722
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 858
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 752
BsrGI TGTACA 1 cut(s) 235
BsrI ACTGG 2 cut(s) 228, 967
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 4 cut(s) 629, 870, 916, 1009
BssMI GATC 4 cut(s) 506, 542, 912, 963
BssNAI GTATAC 1 cut(s) 895
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 870, 916
Bst1107I GTATAC 1 cut(s) 895
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 764, 899, 1002
Bst6I CTCTTC 2 cut(s) 107, 722
BstAUI TGTACA 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 759
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 4 cut(s) 225, 285, 397, 734
BstDEI CTNAG 2 cut(s) 350, 435
BstDSI CCRYGG 1 cut(s) 916
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 6 cut(s) 141, 160, 385, 709, 784, 977
BstKTI GATC 4 cut(s) 509, 545, 915, 966
BstMAI GTCTC 3 cut(s) 176, 354, 488
BstMBI GATC 4 cut(s) 506, 542, 912, 963
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 4 cut(s) 293, 332, 742, 1011
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 296, 355, 498, 629
BstSLI GKGCMC 2 cut(s) 930, 1007
BstSNI TACGTA 1 cut(s) 759
BstV2I GAAGAC 1 cut(s) 980
BstX2I RGATCY 2 cut(s) 542, 963
BstYI RGATCY 2 cut(s) 542, 963
BstZ17I GTATAC 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 888
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 6 cut(s) 227, 348, 416, 440, 928, 976
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 6 cut(s) 141, 160, 385, 709, 784, 977
BtsIMutI CAGTG 1 cut(s) 1007
Cac8I GCNNGC 4 cut(s) 225, 285, 397, 734
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 6 cut(s) 346, 496, 567, 704, 926, 927
ClaI ATCGAT 1 cut(s) 888
CseI GACGC 2 cut(s) 595, 795
Csp6I GTAC 7 cut(s) 236, 650, 664, 756, 760, 765, 859
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 3 cut(s) 172, 805, 917
CviQI GTAC 7 cut(s) 236, 650, 664, 756, 760, 765, 859
DdeI CTNAG 2 cut(s) 350, 435
DpnI GATC 4 cut(s) 508, 544, 914, 965
DpnII GATC 4 cut(s) 506, 542, 912, 963
EaeI YGGCCR 3 cut(s) 225, 414, 974
Eam1104I CTCTTC 2 cut(s) 107, 722
EarI CTCTTC 2 cut(s) 107, 722
EciI GGCGGA 1 cut(s) 341
Eco105I TACGTA 1 cut(s) 759
Eco130I CCWWGG 2 cut(s) 870, 916
Eco24I GRGCYC 1 cut(s) 930
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 699
Eco47I GGWCC 3 cut(s) 496, 567, 704
Eco57I CTGAAG 1 cut(s) 836
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 3 cut(s) 346, 704, 926
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 870, 916
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 2 cut(s) 870, 916
FaeI CATG 3 cut(s) 175, 808, 920
FaqI GGGAC 4 cut(s) 473, 482, 553, 717
FatI CATG 3 cut(s) 171, 804, 916
FauI CCCGC 1 cut(s) 874
FauNDI CATATG 1 cut(s) 454
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 6 cut(s) 148, 167, 372, 696, 791, 964
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 6 cut(s) 227, 348, 416, 440, 928, 976
HapII CCGG 8 cut(s) 357, 500, 583, 595, 631, 724, 753, 981
HgaI GACGC 2 cut(s) 595, 795
Hin1II CATG 3 cut(s) 175, 808, 920
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 2 cut(s) 481, 903
HpaII CCGG 8 cut(s) 357, 500, 583, 595, 631, 724, 753, 981
HphI GGTGA 3 cut(s) 50, 478, 501
Hpy166II GTNNAC 2 cut(s) 274, 895
Hpy188I TCNGA 6 cut(s) 125, 193, 428, 470, 694, 840
Hpy188III TCNNGA 8 cut(s) 305, 340, 540, 702, 724, 773, 910, 981
Hpy8I GTNNAC 2 cut(s) 274, 895
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 5 cut(s) 97, 133, 835, 926, 943
HpyCH4III ACNGT 3 cut(s) 764, 899, 1002
HpyCH4IV ACGT 1 cut(s) 758
HpyCH4V TGCA 1 cut(s) 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 332, 742, 1011
HpyF3I CTNAG 2 cut(s) 350, 435
HpySE526I ACGT 1 cut(s) 758
Hsp92II CATG 3 cut(s) 175, 808, 920
KflI GGGWCCC 1 cut(s) 704
Kpn2I TCCGGA 2 cut(s) 723, 980
KpnI GGTACC 1 cut(s) 862
Kzo9I GATC 4 cut(s) 506, 542, 912, 963
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 1 cut(s) 881
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 2 cut(s) 167, 828
MalI GATC 4 cut(s) 508, 544, 914, 965
MboI GATC 4 cut(s) 506, 542, 912, 963
MboII GAAGA 5 cut(s) 32, 124, 739, 973, 980
MflI RGATCY 2 cut(s) 542, 963
MhlI GDGCHC 2 cut(s) 930, 1007
MlsI TGGCCA 3 cut(s) 227, 416, 976
MluCI AATT 5 cut(s) 143, 320, 672, 719, 992
MluNI TGGCCA 3 cut(s) 227, 416, 976
MlyI GAGTC 1 cut(s) 490
Mox20I TGGCCA 3 cut(s) 227, 416, 976
MroI TCCGGA 2 cut(s) 723, 980
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 3 cut(s) 227, 416, 976
MseI TTAA 3 cut(s) 260, 312, 378
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 3 cut(s) 227, 416, 976
MspA1I CMGCKG 1 cut(s) 856
MspI CCGG 8 cut(s) 357, 500, 583, 595, 631, 724, 753, 981
MspR9I CCNGG 4 cut(s) 298, 357, 500, 631
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 4 cut(s) 293, 332, 742, 1011
NciI CCSGG 3 cut(s) 357, 500, 631
NcoI CCATGG 1 cut(s) 916
NdeI CATATG 1 cut(s) 454
NdeII GATC 4 cut(s) 506, 542, 912, 963
NheI GCTAGC 1 cut(s) 395
NlaIII CATG 3 cut(s) 175, 808, 920
NlaIV GGNNCC 9 cut(s) 347, 498, 569, 705, 706, 860, 883, 927, 928
NmeAIII GCCGAG 2 cut(s) 466, 990
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 447
PciI ACATGT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 903
Pfl23II CGTACG 1 cut(s) 663
PflFI GACNNNGTC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 498
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
Ppu21I YACGTR 1 cut(s) 759
PpuMI RGGWCCY 1 cut(s) 704
PscI ACATGT 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 296
PspLI CGTACG 1 cut(s) 663
PspN4I GGNNCC 9 cut(s) 347, 498, 569, 705, 706, 860, 883, 927, 928
PspOMI GGGCCC 1 cut(s) 926
PspPI GGNCC 6 cut(s) 346, 496, 567, 704, 926, 927
PspPPI RGGWCCY 1 cut(s) 704
PsuI RGATCY 2 cut(s) 542, 963
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 7 cut(s) 237, 651, 665, 757, 761, 766, 860
RsaNI GTAC 7 cut(s) 236, 650, 664, 756, 760, 765, 859
RseI CAYNNNNRTG 1 cut(s) 777
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 3 cut(s) 260, 312, 378
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 506, 542, 912, 963
Sau96I GGNCC 6 cut(s) 346, 496, 567, 704, 926, 927
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 4 cut(s) 298, 357, 500, 631
SduI GDGCHC 2 cut(s) 930, 1007
SfaNI GCATC 1 cut(s) 769
SfuI TTCGAA 1 cut(s) 447
SinI GGWCC 3 cut(s) 496, 567, 704
SmiMI CAYNNNNRTG 1 cut(s) 777
SnaBI TACGTA 1 cut(s) 759
Sse9I AATT 5 cut(s) 143, 320, 672, 719, 992
SsiI CCGC 4 cut(s) 287, 326, 856, 867
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 296, 355, 498, 629
StyI CCWWGG 2 cut(s) 870, 916
TaaI ACNGT 3 cut(s) 764, 899, 1002
TaiI ACGT 1 cut(s) 761
TaqI TCGA 5 cut(s) 447, 825, 888, 901, 947
TaqII GACCGA 1 cut(s) 555
TasI AATT 5 cut(s) 143, 320, 672, 719, 992
TatI WGTACW 2 cut(s) 235, 649
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 3 cut(s) 260, 312, 378
Tru9I TTAA 3 cut(s) 260, 312, 378
TscAI CASTG 1 cut(s) 1007
TspDTI ATGAA 7 cut(s) 17, 125, 152, 231, 267, 634, 651
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 1007
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 496, 567, 704
VspI ATTAAT 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 2 cut(s) 143, 719
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.