Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

51106228 .. 51116038

Gene Structure 9811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTCCTTGAATCCTCCTTGATGGTGGAATGGATGGATAATGAACTTCTTGATGGTGATGATGAATGGAATGGTGATGAAGATATGATTCTTCTTTGGCTAACTTTGAGTGGTAGTGATGGAGTAGTAGTGGTGGTGATGAAGTTTATGGTGGTAGAAGATGGTAGTTGTGGTGGTGATGATGGAGGAGATGGAGTAGATTGGGATTGTGATATTGTATTTCCTCGTGAATCCCATGAGTGGATTAACGTCTCCGGTAGACGTCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGTAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGGTTTGATAAGAACCTTGAGTGGATAAATTTCTCCAGGAATCTTTTCTTGCTCTTTGCTGTATCTAAACCCCTCAATATTTCTGACTTCACTTCTTCAGGCAATGGGGCAGATGGTCCTGCCTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

4.37

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	11, 307
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	5 cut(s)	68, 86, 148, 188, 275
AvaII	GGWCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BauI	CACGAG	1 cut(s)	225
BccI	CCATC	8 cut(s)	16, 28, 47, 113, 155, 176, 185, 479
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	409
BoxI	GACNNNNGTC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	358, 371
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	358, 371
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	358, 371
BssNI	GRCGYC	1 cut(s)	262
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	358, 371
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNI	CCWGG	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	100, 323
CviKI_1	RGCY	2 cut(s)	100, 323
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	358, 371
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	358, 371
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	358, 371
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	239
FaiI	YATR	5 cut(s)	86, 149, 237, 288, 345
FatI	CATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	391
HapII	CCGG	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	4 cut(s)	11, 88, 230, 412
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	5 cut(s)	68, 86, 148, 188, 275
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	50, 227
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	267, 313
HpyCH4IV	ACGT	3 cut(s)	249, 262, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpySE526I	ACGT	3 cut(s)	249, 262, 352
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	239
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	9, 363
LpnPI	CCDG	5 cut(s)	255, 268, 394, 421, 456
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	3 cut(s)	249, 262, 352
MboII	GAAGA	5 cut(s)	83, 92, 170, 317, 459
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	400
MnlI	CCTC	5 cut(s)	25, 179, 234, 289, 455
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	363
NlaIII	CATG	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	11, 88, 230, 412
PfoI	TCCNGGA	1 cut(s)	407
PshAI	GACNNNNGTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	6 cut(s)	252, 265, 305, 355, 377, 390
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	400
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	2 cut(s)	358, 371
TaiI	ACGT	3 cut(s)	252, 265, 355
TaqI	TCGA	2 cut(s)	328, 498
TasI	AATT	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	11, 88, 230, 412
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	57, 78, 93, 155
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.