Rh5AG420900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001756
Physical Location & Seq
Reverse (-)
72682491 .. 72692410
9920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG420900.1

Sequence Viewer

Length: 318 bp
ATGAAGAGCAGCAATATCATTGCATGCAATTGTTTTGAGCAGCAGATGAATGGCAACCAAAAAGATGAAGTGATTTGCGAAGCAAGCGAAAAGATGAAGTGGTCTGCCAATTATATGTATCCTTTGAGATTAGATACCCCTTCTGAATTCTTCGGCTACTGGATTAAAGCATTTTTAATTGAAAGAAGAAGACAAGTTGGTGAAAACAACAATCAGAGAATTCGGAAAAATTGGTGCGCAAAGGATCATCGGAGAAAATCAAGGAACAAAGCTCTCCATAGTACCGCCAAACCATATCACCATTCTAAGGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.54

Weight (kDa)

9.77

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 238
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 2 cut(s) 146, 219
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 9, 40
ApoI RAATTY 2 cut(s) 146, 219
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 212, 290
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 21, 52
BciVI GTATCC 1 cut(s) 129
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 2 cut(s) 10, 41
BlsI GCNGC 2 cut(s) 11, 42
BpiI GAAGAC 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 21, 52
BslI CCNNNNNNNGG 1 cut(s) 307
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 164
BssMI GATC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 25, 85
BstDEI CTNAG 1 cut(s) 306
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 21, 52
BstV2I GAAGAC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 25, 85
CfoI GCGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 24
CviJI RGCY 2 cut(s) 156, 272
CviKI_1 RGCY 2 cut(s) 156, 272
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 306
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EcoRI GAATTC 2 cut(s) 146, 219
FaeI CATG 1 cut(s) 27
FaiI YATR 5 cut(s) 25, 114, 116, 279, 295
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 10, 41
Fsp4HI GCNGC 2 cut(s) 10, 41
FspI TGCGCA 1 cut(s) 238
GlaI GCGC 1 cut(s) 238
GluI GCNGC 2 cut(s) 10, 41
HhaI GCGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 27
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HphI GGTGA 2 cut(s) 212, 290
Hpy188I TCNGA 4 cut(s) 145, 216, 225, 252
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 23, 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 27
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 21, 52
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 16, 142, 198, 201
MfeI CAATTG 1 cut(s) 28
MluCI AATT 6 cut(s) 28, 109, 146, 177, 219, 229
MseI TTAA 2 cut(s) 165, 176
MunI CAATTG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 27
NsbI TGCGCA 1 cut(s) 238
NspI RCATGY 1 cut(s) 27
PaeI GCATGC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 11, 42
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 165, 176
SatI GCNGC 2 cut(s) 10, 41
Sau3AI GATC 1 cut(s) 244
SetI ASST 2 cut(s) 274, 312
SgeI CNNG 5 cut(s) 36, 96, 172, 206, 273
SphI GCATGC 1 cut(s) 27
Sse9I AATT 6 cut(s) 28, 109, 146, 177, 219, 229
SsiI CCGC 1 cut(s) 285
TasI AATT 6 cut(s) 28, 109, 146, 177, 219, 229
Tru1I TTAA 2 cut(s) 165, 176
Tru9I TTAA 2 cut(s) 165, 176
TseI GCWGC 2 cut(s) 9, 40
TspDTI ATGAA 4 cut(s) 17, 62, 81, 110
XapI RAATTY 2 cut(s) 146, 219
XceI RCATGY 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.