Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

12780723 .. 12781926

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTACGGCCATCGACACGCCAGTCGAATTCGAAACATATGGGGACACCCCCGGACCAAAGCTAAGGGTTTCCACCCCGGCCCGGTGGTCGTGGATGAGCCACGAAAGAGGGAGTGGGTCCATAGTTAGGACCGGTCACCCCATACCTCAAGCAAGAGAAGCAAAGAGTCCTAGTCCAGGTCCAACGGTTACGGGACCACTCGGCCACACGGGAGCAAAGGGCATAGCACGCCCCGTGAACACCACCACCACCCGGTATGAGGTGTTCACTATCCTCAACGCTTCATACGAGACTATTTGGAACGAGAACAAGGATGAGATACCTAGAACACCACCAAGGAAGTTCCCGAAGAGTAAACTTACCCGCAGATACGGAAGGTTCGTACATATCACGAGGATGCTAGGCACAATACCAATCTCTCGTGTGGCTTTAAAAAATACTATCGAGTCGCTTATCCAGAGAGGCAAGCTTCGGAGGTACCTGCTCGCTAAAGAGATAGGAGCTATAGACGTGTACGGCCATATCTTCACTATCCAAGACGAAGGCACCGAGTGGAAATCCGTCACATTCCCGCAGGAGGAGGAAGCTAATGCGAAGATGCCCCATGATGATCCCTTCCCGATCACGCTCCAAATGGACCATTACATAATGTCCCGGTACTCGTGGATACGGGGCCTCGGTCAAATGCTAGTAATGAAGGTGCCAACCCAGGTTGGCATCGCCACCATTCGGGGTGATCGAGATAAGGCGAGGCAATGCTATTCTTTGACCGTATCTCGGGGAAAGGGAAAGTCCGAGATGTTGCCCGTAGCTACTAACCCTCCGACGGACGTGTATGAGGATCCCGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

285

Amino Acids

32.08

Weight (kDa)

9.65

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	492
Acc65I	GGTACC	1 cut(s)	480
AccB1I	GGYRCC	3 cut(s)	480, 548, 703
AciI	CCGC	2 cut(s)	367, 575
AclWI	GGATC	3 cut(s)	608, 839, 852
AcoI	YGGCCR	3 cut(s)	9, 205, 520
AcsI	RAATTY	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	555
AfaI	GTAC	4 cut(s)	387, 482, 518, 662
AfiI	CCNNNNNNNGG	9 cut(s)	84, 129, 179, 255, 262, 580, 732, 780, 829
AflIII	ACRYGT	2 cut(s)	513, 834
AgeI	ACCGGT	1 cut(s)	134
AjiI	CACGTC	2 cut(s)	514, 835
AjnI	CCWGG	2 cut(s)	178, 711
AluBI	AGCT	5 cut(s)	64, 472, 506, 590, 815
AluI	AGCT	5 cut(s)	64, 472, 506, 590, 815
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	3 cut(s)	608, 839, 852
Ama87I	CYCGRG	2 cut(s)	780, 848
AoxI	GGCC	5 cut(s)	9, 81, 205, 520, 676
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	134
Asp718I	GGTACC	1 cut(s)	480
AspS9I	GGNCC	8 cut(s)	56, 82, 120, 132, 182, 197, 640, 676
AsuC2I	CCSGG	5 cut(s)	54, 80, 85, 256, 658
AsuHPI	GGTGA	2 cut(s)	131, 749
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	2 cut(s)	780, 848
AvaII	GGWCC	6 cut(s)	56, 120, 132, 182, 197, 640
BamHI	GGATCC	1 cut(s)	844
BanI	GGYRCC	3 cut(s)	480, 548, 703
BauI	CACGAG	3 cut(s)	394, 423, 664
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	24, 535
BciT130I	CCWGG	2 cut(s)	180, 713
BciVI	GTATCC	1 cut(s)	663
BcnI	CCSGG	5 cut(s)	54, 80, 85, 256, 658
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	4 cut(s)	174, 327, 404, 692
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	663
Bme1390I	CCNGG	7 cut(s)	54, 80, 85, 180, 256, 658, 713
Bme18I	GGWCC	6 cut(s)	56, 120, 132, 182, 197, 640
BmeT110I	CYCGRG	2 cut(s)	780, 848
BmgBI	CACGTC	2 cut(s)	514, 835
BmgT120I	GGNCC	8 cut(s)	56, 82, 120, 132, 182, 197, 640, 676
BmiI	GGNNCC	7 cut(s)	121, 198, 482, 550, 677, 705, 846
BmrFI	CCNGG	7 cut(s)	54, 80, 85, 180, 256, 658, 713
BmsI	GCATC	3 cut(s)	390, 591, 729
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	5 cut(s)	54, 80, 85, 256, 658
BsaJI	CCNNGG	5 cut(s)	52, 78, 338, 679, 711
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	9 cut(s)	84, 129, 179, 255, 262, 580, 732, 780, 829
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	2 cut(s)	180, 713
BseDI	CCNNGG	5 cut(s)	52, 78, 338, 679, 711
BseGI	GGATG	3 cut(s)	102, 322, 405
BseLI	CCNNNNNNNGG	9 cut(s)	84, 129, 179, 255, 262, 580, 732, 780, 829
BseMI	GCAATG	1 cut(s)	764
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	596
BshFI	GGCC	5 cut(s)	11, 83, 207, 522, 678
BshNI	GGYRCC	3 cut(s)	480, 548, 703
BshTI	ACCGGT	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	780, 848
BsiSI	CCGG	6 cut(s)	54, 80, 85, 135, 256, 658
BslFI	GGGAC	3 cut(s)	59, 210, 640
BslI	CCNNNNNNNGG	9 cut(s)	84, 129, 179, 255, 262, 580, 732, 780, 829
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	3 cut(s)	59, 210, 640
BsnI	GGCC	5 cut(s)	11, 83, 207, 522, 678
BsoBI	CYCGRG	2 cut(s)	780, 848
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	613, 624, 739, 844
BspACI	CCGC	2 cut(s)	367, 575
BspANI	GGCC	5 cut(s)	11, 83, 207, 522, 678
BspLI	GGNNCC	7 cut(s)	121, 198, 482, 550, 677, 705, 846
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	608, 839, 852
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	3 cut(s)	480, 548, 703
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	52, 78, 338, 679, 711
BssMI	GATC	4 cut(s)	613, 624, 739, 844
BssSI	CACGAG	3 cut(s)	394, 423, 664
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	3 cut(s)	394, 423, 664
Bst2UI	CCWGG	2 cut(s)	180, 713
Bst4CI	ACNGT	2 cut(s)	190, 775
Bst6I	CTCTTC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	232, 470, 489
BstDEI	CTNAG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	137
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	102, 322, 405
BstKTI	GATC	4 cut(s)	616, 627, 742, 847
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	4 cut(s)	613, 624, 739, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 231
BstNI	CCWGG	2 cut(s)	180, 713
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	7 cut(s)	52, 78, 83, 178, 254, 656, 711
BstSFI	CTRYAG	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	5 cut(s)	11, 83, 207, 522, 678
BtgZI	GCGATG	1 cut(s)	706
BtrI	CACGTC	2 cut(s)	514, 835
BtsCI	GGATG	3 cut(s)	102, 322, 405
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	232, 470, 489
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	8 cut(s)	56, 82, 120, 132, 182, 197, 640, 676
Csp6I	GTAC	4 cut(s)	386, 481, 517, 661
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	4 cut(s)	386, 481, 517, 661
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	4 cut(s)	615, 626, 741, 846
DpnII	GATC	4 cut(s)	613, 624, 739, 844
DraI	TTTAAA	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	3 cut(s)	9, 205, 520
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	6 cut(s)	56, 120, 132, 182, 197, 640
Eco88I	CYCGRG	2 cut(s)	780, 848
Eco91I	GGTNACC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	178, 711
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	1 cut(s)	611
FaqI	GGGAC	3 cut(s)	59, 210, 640
FatI	CATG	1 cut(s)	607
FauI	CCCGC	2 cut(s)	374, 582
FauNDI	CATATG	1 cut(s)	40
FokI	GGATG	3 cut(s)	109, 329, 412
FspBI	CTAG	4 cut(s)	174, 327, 404, 692
HaeIII	GGCC	5 cut(s)	11, 83, 207, 522, 678
HapII	CCGG	6 cut(s)	54, 80, 85, 135, 256, 658
Hin1II	CATG	1 cut(s)	611
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	169, 449
HpaII	CCGG	6 cut(s)	54, 80, 85, 135, 256, 658
HphI	GGTGA	2 cut(s)	131, 749
Hpy166II	GTNNAC	4 cut(s)	241, 270, 359, 517
Hpy188I	TCNGA	3 cut(s)	477, 799, 828
Hpy188III	TCNNGA	6 cut(s)	349, 394, 460, 622, 743, 848
Hpy8I	GTNNAC	4 cut(s)	241, 270, 359, 517
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	4 cut(s)	372, 539, 628, 694
HpyCH4III	ACNGT	2 cut(s)	190, 775
HpyCH4IV	ACGT	2 cut(s)	513, 834
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 231
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	513, 834
Hsp92II	CATG	1 cut(s)	611
KpnI	GGTACC	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	613, 624, 739, 844
LmnI	GCTCC	3 cut(s)	215, 503, 636
LweI	GCATC	3 cut(s)	390, 591, 729
MaeI	CTAG	4 cut(s)	174, 327, 404, 692
MaeII	ACGT	2 cut(s)	513, 834
MaeIII	GTNAC	3 cut(s)	137, 190, 565
MalI	GATC	4 cut(s)	615, 626, 741, 846
MboI	GATC	4 cut(s)	613, 624, 739, 844
MboII	GAAGA	3 cut(s)	364, 520, 610
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	178, 458
MmeI	TCCRAC	2 cut(s)	209, 851
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	6 cut(s)	54, 80, 85, 135, 256, 658
MspR9I	CCNGG	7 cut(s)	54, 80, 85, 180, 256, 658, 713
MvaI	CCWGG	2 cut(s)	180, 713
MwoI	GCNNNNNNNGC	2 cut(s)	161, 231
NciI	CCSGG	5 cut(s)	54, 80, 85, 256, 658
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	4 cut(s)	613, 624, 739, 844
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	7 cut(s)	121, 198, 482, 550, 677, 705, 846
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	137, 565
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	4 cut(s)	288, 381, 549, 739
PinAI	ACCGGT	1 cut(s)	134
PleI	GAGTC	2 cut(s)	177, 457
PpsI	GAGTC	2 cut(s)	177, 457
Psp6I	CCWGG	2 cut(s)	178, 711
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	178, 711
PspN4I	GGNNCC	7 cut(s)	121, 198, 482, 550, 677, 705, 846
PspPI	GGNCC	8 cut(s)	56, 82, 120, 132, 182, 197, 640, 676
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PsuI	RGATCY	1 cut(s)	844
RsaI	GTAC	4 cut(s)	387, 482, 518, 662
RsaNI	GTAC	4 cut(s)	386, 481, 517, 661
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	4 cut(s)	613, 624, 739, 844
Sau96I	GGNCC	8 cut(s)	56, 82, 120, 132, 182, 197, 640, 676
SchI	GAGTC	2 cut(s)	178, 458
ScrFI	CCNGG	7 cut(s)	54, 80, 85, 180, 256, 658, 713
SfaNI	GCATC	3 cut(s)	390, 591, 729
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	6 cut(s)	56, 120, 132, 182, 197, 640
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	2 cut(s)	367, 575
SspMI	CTAG	4 cut(s)	174, 327, 404, 692
StyD4I	CCNGG	7 cut(s)	52, 78, 83, 178, 254, 656, 711
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	190, 775
TaiI	ACGT	2 cut(s)	516, 837
TaqI	TCGA	5 cut(s)	15, 27, 33, 447, 742
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TseFI	GTSAC	2 cut(s)	137, 565
Tsp45I	GTSAC	2 cut(s)	137, 565
TspDTI	ATGAA	2 cut(s)	276, 713
TspGWI	ACGGA	3 cut(s)	390, 553, 845
VpaK11BI	GGWCC	6 cut(s)	56, 120, 132, 182, 197, 640
XagI	CCTNNNNNAGG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	4 cut(s)	174, 327, 404, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.