Rroxscaffold_3G00259740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001756
Physical Location & Seq
Reverse (-)
54154615 .. 54155545
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259740.1

Sequence Viewer

Length: 309 bp
ATGCTCCTTGAATCCTCCTTGATGGTGGAATGGATGGATGATAAGCTTCTTGATGGTAATGATGAATGGAATGGTGATGAAGATATGATGCTCTTTTGGCCAACTTTGAGTGGTAGTGATGGAGTAATGGTGGTGGTGATGAAGGTTGAGGAATATGGATATTATGGGTTTGGATTTTGGGAGGTGGAGATGGAGACCCGCCCGGATTTCACCCTCGAAATCCGAGGTGGCCCTGCGGGGCCCACCTTAAAGATAACTAAACCGAGAATTGGCCGAGTCACCCCTAAAGTGGACTACCCAAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.71

Weight (kDa)

4.32

Isoelectric Point (pI)

12.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 199, 236
AcoI YGGCCR 2 cut(s) 98, 271
AfiI CCNNNNNNNGG 2 cut(s) 269, 289
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 4 cut(s) 98, 229, 239, 271
ApaI GGGCCC 1 cut(s) 243
AspS9I GGNCC 3 cut(s) 230, 239, 240
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 86, 148, 202, 271
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 243
BccI CCATC 5 cut(s) 16, 28, 47, 113, 184
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 230, 239, 240
BmiI GGNNCC 2 cut(s) 240, 241
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 289
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 39, 43
BseLI CCNNNNNNNGG 2 cut(s) 269, 289
BseSI GKGCMC 1 cut(s) 243
BshFI GGCC 4 cut(s) 100, 231, 241, 273
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 269, 289
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 4 cut(s) 100, 231, 241, 273
Bso31I GGTCTC 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 243
BspACI CCGC 2 cut(s) 199, 236
BspANI GGCC 4 cut(s) 100, 231, 241, 273
BspLI GGNNCC 2 cut(s) 240, 241
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 39, 43
BstMAI GTCTC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 243
BsuRI GGCC 4 cut(s) 100, 231, 241, 273
BtsCI GGATG 2 cut(s) 39, 43
Cfr13I GGNCC 3 cut(s) 230, 239, 240
CviJI RGCY 5 cut(s) 46, 100, 231, 241, 273
CviKI_1 RGCY 5 cut(s) 46, 100, 231, 241, 273
EaeI YGGCCR 2 cut(s) 98, 271
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 3 cut(s) 86, 156, 165
FauI CCCGC 2 cut(s) 206, 229
FokI GGATG 2 cut(s) 46, 50
FriOI GRGCYC 1 cut(s) 243
HaeIII GGCC 4 cut(s) 100, 231, 241, 273
HapII CCGG 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 11, 276
HpaII CCGG 1 cut(s) 203
HphI GGTGA 4 cut(s) 86, 148, 202, 271
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 216, 246
LweI GCATC 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 100
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 5 cut(s) 25, 142, 175, 218, 224
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 240, 241
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 240, 241
PspOMI GGGCCC 1 cut(s) 239
PspPI GGNCC 3 cut(s) 230, 239, 240
SaqAI TTAA 1 cut(s) 248
Sau96I GGNCC 3 cut(s) 230, 239, 240
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 243
SetI ASST 5 cut(s) 48, 147, 186, 229, 248
SfaNI GCATC 1 cut(s) 78
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 199, 236
StyD4I CCNGG 1 cut(s) 201
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 267
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 78, 93, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.