Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041581.1

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

1323 .. 2199

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041581.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgccgctacagccttcgcacaggccgagtacgatacctttgctagcgatacaagcaacagcaaccacccagttaatgagcctcaactcaacacccccattgggacctccgatagcaggaacaaagacaccaatcgagacaaactggcccagcagaatgacagaaccccacgaaagcggccgggttacaggcacagataaccagcgatttgaggcaacccgatacaagatttacaccacactcaccacttcttatgaggaaatctggaataaccacaaggacatgatcccgcgcccaccgcgacgcaaacctggccaggcaaaacctcgagataatggtaaatattgtacatatgatgaggaatctggccaccccaccaatatatgttgggcactgaaaaatgctatcgagcacctcattcagagcagccaactcttgcagcatcacaatctctctacaggccctaacgctattgaagtctacggacaaatcttaacgatacacggtggccccccaagggcacccgagactcatcatgcacagaaactccaatgccctcgggccaaagagatattggggctcagccacagctgccacacctcgcaggtagaatgggactcaattgcctttaatcgcagcgaagagaccataaagaagcaccataacgaccccttcttgatcaccatgatcatcgaccactatcgatgccatcgggtcctgggcgacaatggcgcggtggtcagtgtcatgtttggcagtggctatgaaggccttaacctagaccacgagccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

264

Amino Acids

29.65

Weight (kDa)

6.99

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	3 cut(s)	292, 301, 734
AciI	CCGC	5 cut(s)	5, 177, 290, 299, 734
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	3 cut(s)	178, 313, 367
AfaI	GTAC	2 cut(s)	31, 349
AfiI	CCNNNNNNNGG	3 cut(s)	101, 116, 517
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	3 cut(s)	310, 315, 717
AluBI	AGCT	1 cut(s)	591
AluI	AGCT	1 cut(s)	591
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	131, 521, 638
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	3 cut(s)	327, 524, 558
AoxI	GGCC	9 cut(s)	23, 146, 178, 313, 367, 460, 508, 561, 769
ApeKI	GCWGC	4 cut(s)	426, 439, 591, 636
AspLEI	GCGC	2 cut(s)	294, 734
AspS9I	GGNCC	6 cut(s)	104, 147, 461, 509, 561, 715
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	235, 673
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	3 cut(s)	327, 524, 558
AvaII	GGWCC	2 cut(s)	104, 715
BaeGI	GKGCMC	2 cut(s)	394, 523
BalI	TGGCCA	2 cut(s)	315, 369
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	582, 792
BauI	CACGAG	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	438, 451, 578, 648
BccI	CCATC	1 cut(s)	717
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	3 cut(s)	312, 317, 719
BclI	TGATCA	2 cut(s)	678, 687
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	131, 521, 638
BfaI	CTAG	2 cut(s)	44, 779
BfmI	CTRYAG	2 cut(s)	8, 456
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	6 cut(s)	5, 178, 427, 440, 592, 637
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	6 cut(s)	6, 179, 428, 441, 593, 638
Bme1390I	CCNGG	4 cut(s)	182, 312, 317, 719
Bme18I	GGWCC	2 cut(s)	104, 715
BmeT110I	CYCGRG	3 cut(s)	327, 524, 558
BmgT120I	GGNCC	6 cut(s)	104, 147, 461, 509, 561, 715
BmiI	GGNNCC	4 cut(s)	105, 511, 522, 716
BmrFI	CCNGG	4 cut(s)	182, 312, 317, 719
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	451, 695
BmtI	GCTAGC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	64
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	3 cut(s)	515, 557, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 116, 517
Bse1I	ACTGG	2 cut(s)	70, 149
BseBI	CCWGG	3 cut(s)	312, 317, 719
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	3 cut(s)	515, 557, 718
BseLI	CCNNNNNNNGG	3 cut(s)	101, 116, 517
BseMII	CTCAG	1 cut(s)	595
BseNI	ACTGG	2 cut(s)	70, 149
BseSI	GKGCMC	2 cut(s)	394, 523
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	438, 451, 578, 648
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	3 cut(s)	292, 301, 734
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	9 cut(s)	25, 148, 180, 315, 369, 462, 510, 563, 771
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	703
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	3 cut(s)	327, 524, 558
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	117, 629
BslI	CCNNNNNNNGG	3 cut(s)	101, 116, 517
BsmAI	GTCTC	3 cut(s)	131, 521, 638
BsmFI	GGGAC	2 cut(s)	117, 629
BsnI	GGCC	9 cut(s)	25, 148, 180, 315, 369, 462, 510, 563, 771
Bso31I	GGTCTC	1 cut(s)	638
BsoBI	CYCGRG	3 cut(s)	327, 524, 558
Bsp1286I	GDGCHC	5 cut(s)	394, 414, 523, 582, 792
Bsp1407I	TGTACA	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	285, 678, 687
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	5 cut(s)	5, 177, 290, 299, 734
BspANI	GGCC	9 cut(s)	25, 148, 180, 315, 369, 462, 510, 563, 771
BspCNI	CTCAG	1 cut(s)	594
BspDI	ATCGAT	1 cut(s)	703
BspFNI	CGCG	3 cut(s)	292, 301, 734
BspLI	GGNNCC	4 cut(s)	105, 511, 522, 716
BspMI	ACCTGC	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	70, 149
BssECI	CCNNGG	3 cut(s)	515, 557, 718
BssMI	GATC	3 cut(s)	285, 678, 687
BssSI	CACGAG	1 cut(s)	785
BssT1I	CCWWGG	1 cut(s)	515
Bst2BI	CACGAG	1 cut(s)	785
Bst2UI	CCWGG	3 cut(s)	312, 317, 719
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	581
BstFNI	CGCG	3 cut(s)	292, 301, 734
BstHHI	GCGC	2 cut(s)	294, 734
BstKTI	GATC	3 cut(s)	288, 681, 690
BstMAI	GTCTC	3 cut(s)	131, 521, 638
BstMBI	GATC	3 cut(s)	285, 678, 687
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 53, 298, 312, 591, 729, 768
BstNI	CCWGG	3 cut(s)	312, 317, 719
BstSCI	CCNGG	4 cut(s)	180, 310, 315, 717
BstSFI	CTRYAG	2 cut(s)	8, 456
BstSLI	GKGCMC	2 cut(s)	394, 523
BstUI	CGCG	3 cut(s)	292, 301, 734
BstV1I	GCAGC	4 cut(s)	438, 451, 578, 648
BstZI	CGGCCG	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	9 cut(s)	25, 148, 180, 315, 369, 462, 510, 563, 771
BsuTUI	ATCGAT	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	392, 748, 763
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	2 cut(s)	294, 734
Cfr13I	GGNCC	6 cut(s)	104, 147, 461, 509, 561, 715
ClaI	ATCGAT	1 cut(s)	703
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	30, 348
CviAII	CATG	4 cut(s)	283, 536, 685, 748
CviQI	GTAC	2 cut(s)	30, 348
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	3 cut(s)	287, 680, 689
DpnII	GATC	3 cut(s)	285, 678, 687
EaeI	YGGCCR	3 cut(s)	178, 313, 367
EagI	CGGCCG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	771
Eco24I	GRGCYC	2 cut(s)	582, 792
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	104, 715
Eco52I	CGGCCG	1 cut(s)	178
Eco88I	CYCGRG	3 cut(s)	327, 524, 558
EcoO109I	RGGNCCY	3 cut(s)	104, 461, 715
EcoRII	CCWGG	3 cut(s)	310, 315, 717
EcoT14I	CCWWGG	1 cut(s)	515
EcoT38I	GRGCYC	2 cut(s)	582, 792
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	4 cut(s)	286, 539, 688, 751
FaqI	GGGAC	2 cut(s)	117, 629
FatI	CATG	4 cut(s)	282, 535, 684, 747
FauI	CCCGC	1 cut(s)	297
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	678, 687
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	6 cut(s)	5, 178, 427, 440, 592, 637
FriOI	GRGCYC	2 cut(s)	582, 792
Fsp4HI	GCNGC	6 cut(s)	5, 178, 427, 440, 592, 637
FspBI	CTAG	2 cut(s)	44, 779
GlaI	GCGC	2 cut(s)	293, 733
GluI	GCNGC	6 cut(s)	5, 178, 427, 440, 592, 637
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	9 cut(s)	25, 148, 180, 315, 369, 462, 510, 563, 771
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	2 cut(s)	294, 734
Hin1II	CATG	4 cut(s)	286, 539, 688, 751
Hin6I	GCGC	2 cut(s)	292, 732
HinP1I	GCGC	2 cut(s)	292, 732
HinfI	GANTC	3 cut(s)	362, 529, 617
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	235, 673
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	111, 423
Hpy188III	TCNNGA	4 cut(s)	136, 265, 329, 676
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	3 cut(s)	24, 682, 761
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	2 cut(s)	439, 539
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 53, 298, 312, 591, 729, 768
HpyF3I	CTNAG	1 cut(s)	581
Hsp92II	CATG	4 cut(s)	286, 539, 688, 751
HspAI	GCGC	2 cut(s)	292, 732
Ksp22I	TGATCA	2 cut(s)	678, 687
Kzo9I	GATC	3 cut(s)	285, 678, 687
Lsp1109I	GCAGC	4 cut(s)	438, 451, 578, 648
LweI	GCATC	2 cut(s)	451, 695
MaeI	CTAG	2 cut(s)	44, 779
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	287, 680, 689
MboI	GATC	3 cut(s)	285, 678, 687
MboII	GAAGA	1 cut(s)	653
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	5 cut(s)	394, 414, 523, 582, 792
MlsI	TGGCCA	2 cut(s)	315, 369
MluCI	AATT	1 cut(s)	621
MluNI	TGGCCA	2 cut(s)	315, 369
MlyI	GAGTC	2 cut(s)	523, 611
MnlI	CCTC	9 cut(s)	92, 117, 205, 250, 336, 352, 425, 567, 610
Mox20I	TGGCCA	2 cut(s)	315, 369
MscI	TGGCCA	2 cut(s)	315, 369
MseI	TTAA	4 cut(s)	74, 494, 630, 774
Msp20I	TGGCCA	2 cut(s)	315, 369
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	4 cut(s)	182, 312, 317, 719
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	3 cut(s)	312, 317, 719
MvnI	CGCG	3 cut(s)	292, 301, 734
MwoI	GCNNNNNNNGC	7 cut(s)	10, 53, 298, 312, 591, 729, 768
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	285, 678, 687
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	286, 539, 688, 751
NlaIV	GGNNCC	4 cut(s)	105, 511, 522, 716
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	6, 179, 428, 441, 593, 638
PleI	GAGTC	2 cut(s)	523, 611
PpsI	GAGTC	2 cut(s)	523, 611
PpuMI	RGGWCCY	2 cut(s)	104, 715
Psp5II	RGGWCCY	2 cut(s)	104, 715
Psp6I	CCWGG	3 cut(s)	310, 315, 717
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	310, 315, 717
PspN4I	GGNNCC	4 cut(s)	105, 511, 522, 716
PspPI	GGNCC	6 cut(s)	104, 147, 461, 509, 561, 715
PspPPI	RGGWCCY	2 cut(s)	104, 715
PvuII	CAGCTG	1 cut(s)	591
RsaI	GTAC	2 cut(s)	31, 349
RsaNI	GTAC	2 cut(s)	30, 348
SaqAI	TTAA	4 cut(s)	74, 494, 630, 774
SatI	GCNGC	6 cut(s)	5, 178, 427, 440, 592, 637
Sau3AI	GATC	3 cut(s)	285, 678, 687
Sau96I	GGNCC	6 cut(s)	104, 147, 461, 509, 561, 715
SchI	GAGTC	2 cut(s)	523, 611
ScrFI	CCNGG	4 cut(s)	182, 312, 317, 719
SduI	GDGCHC	5 cut(s)	394, 414, 523, 582, 792
SetI	ASST	9 cut(s)	40, 109, 313, 328, 417, 593, 602, 609, 780
SfaNI	GCATC	2 cut(s)	451, 695
SfcI	CTRYAG	2 cut(s)	8, 456
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	104, 715
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	621
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	5 cut(s)	5, 177, 290, 299, 734
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	44, 779
StuI	AGGCCT	1 cut(s)	771
StyD4I	CCNGG	4 cut(s)	180, 310, 315, 717
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	5 cut(s)	135, 328, 408, 693, 703
TasI	AATT	1 cut(s)	621
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	2 cut(s)	7, 180
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	74, 494, 630, 774
Tru9I	TTAA	4 cut(s)	74, 494, 630, 774
TscAI	CASTG	3 cut(s)	399, 748, 763
TseI	GCWGC	4 cut(s)	426, 439, 591, 636
TspDTI	ATGAA	1 cut(s)	780
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	3 cut(s)	399, 748, 763
VpaK11BI	GGWCC	2 cut(s)	104, 715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	2 cut(s)	44, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.