Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433019.1

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1492

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ggtgatagaaaaggaatcaacaggtttggtgacttctctgctcctcttgatgaagcatggattcatgtctcactggatttatctggccgaccacatttgggttatgatcttcagatacccaccgagagagttggtacctatgacactcagctggtggaacattttttccagtctttggtgaatacttctggtatgacacttcatatccggcagcttgctggaaggaactctcaccatattattgaggcaaccttcaaagcatttgcaagggctcttcgacaagcactagaatatgacccacgtcgccttgggagcattccaaggtttgataagaaccttgagtggataaatttctccaggaaccttttcttgctctttggtaaatcagtgataatatttactcggcatttggaactcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004424 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

IGPD

Protein Analysis

140

Amino Acids

16.18

Weight (kDa)

9.22

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	98, 175
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	356
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	2 cut(s)	151, 214
AluI	AGCT	2 cut(s)	151, 214
Alw26I	GTCTC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	14, 41, 190, 224
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	136, 362
BmrFI	CCNGG	1 cut(s)	358
BoxI	GACNNNNGTC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	307, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 175
Bse1I	ACTGG	2 cut(s)	78, 169
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	307, 320
BseLI	CCNNNNNNNGG	2 cut(s)	98, 175
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	78, 169
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	98, 175
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	136, 362
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	78, 169
BssECI	CCNNGG	2 cut(s)	307, 320
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	2 cut(s)	307, 320
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	71, 393
Cac8I	GCNNGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	2 cut(s)	57, 65
CviJI	RGCY	4 cut(s)	87, 151, 214, 272
CviKI_1	RGCY	4 cut(s)	87, 151, 214, 272
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	307, 320
Eco24I	GRGCYC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	307, 320
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	2 cut(s)	307, 320
FaeI	CATG	2 cut(s)	60, 68
FatI	CATG	2 cut(s)	56, 64
Fnu4HI	GCNGC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	2 cut(s)	60, 68
HinfI	GANTC	2 cut(s)	15, 61
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	4 cut(s)	14, 41, 190, 224
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	216, 262
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	60, 68
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	46, 312
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	101, 266
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	2 cut(s)	54, 238
MroXI	GAANNNNTTC	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	60, 68
NlaIV	GGNNCC	2 cut(s)	136, 362
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	15, 61
PflMI	CCANNNNNTGG	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	213
PshAI	GACNNNNGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	136, 362
PvuII	CAGCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	9 cut(s)	26, 140, 153, 216, 254, 304, 326, 339, 366
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	349
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	307, 320
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	15, 61
TscAI	CASTG	2 cut(s)	78, 393
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	53, 66, 191
TspRI	CASTG	2 cut(s)	78, 393
Van91I	CCANNNNNTGG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.