Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025211.1

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

8264 .. 8581

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025211.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtatgaggtgttcactatcctcaacgcttcatacgagactatttggaacgagaacaaggatgagatacctagaccaccaccgaggaagttcccgaagagtaaacttacccagcaggataccagaaggttttgtacacatcacgaggacgctgggcacaataccaatctctgtgtggctttaaaacatactatcgagtcacttatccagaggggcaagcttcagcggtacctgcctgcaaaagagattggagctatagacgtgtacggccaaatcttcaagatccccggtgagggcccgaaagagttgcctccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

8.58

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	228
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	136, 230, 266
AfiI	CCNNNNNNNGG	2 cut(s)	292, 293
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	220, 254
AluI	AGCT	2 cut(s)	220, 254
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	2 cut(s)	268, 295
ApaI	GGGCCC	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	295, 296
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	159, 299
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	299
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BauI	CACGAG	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	72, 316
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	295, 296
BmiI	GGNNCC	2 cut(s)	230, 297
BmrFI	CCNGG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	83, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 293
BseDI	CCNNGG	2 cut(s)	83, 286
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	292, 293
BseSI	GKGCMC	2 cut(s)	159, 299
BseYI	CCCAGC	2 cut(s)	111, 152
BshFI	GGCC	2 cut(s)	270, 297
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	292, 293
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	270, 297
Bsp120I	GGGCCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	159, 299
Bsp1407I	TGTACA	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	270, 297
BspLI	GGNNCC	2 cut(s)	230, 297
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	83, 286
BssMI	GATC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	218, 237
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	2 cut(s)	159, 299
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	270, 297
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	218, 237
Cfr13I	GGNCC	2 cut(s)	295, 296
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	135, 229, 265
CviJI	RGCY	5 cut(s)	179, 220, 254, 270, 297
CviKI_1	RGCY	5 cut(s)	179, 220, 254, 270, 297
CviQI	GTAC	3 cut(s)	135, 229, 265
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	299
FaiI	YATR	4 cut(s)	6, 34, 189, 257
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	72, 316
GsaI	CCCAGC	2 cut(s)	115, 156
HaeIII	GGCC	2 cut(s)	270, 297
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	4 cut(s)	15, 104, 137, 265
Hpy188III	TCNNGA	4 cut(s)	94, 143, 208, 280
Hpy8I	GTNNAC	4 cut(s)	15, 104, 137, 265
HpyAV	CCTTC	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpySE526I	ACGT	1 cut(s)	261
KpnI	GGTACC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	101, 125, 136, 138, 221, 245, 249, 301
MaeI	CTAG	2 cut(s)	72, 316
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	109, 268
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	159, 299
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	32, 78, 139, 204, 286
MseI	TTAA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	230, 297
NmuCI	GTSAC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	111, 152
PspN4I	GGNNCC	2 cut(s)	230, 297
PspOMI	GGGCCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	295, 296
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	3 cut(s)	136, 230, 266
RsaNI	GTAC	3 cut(s)	135, 229, 265
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	295, 296
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	159, 299
SetI	ASST	7 cut(s)	12, 73, 131, 222, 234, 256, 264
SfcI	CTRYAG	1 cut(s)	255
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	72, 316
StyD4I	CCNGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	195
TatI	WGTACW	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	2 cut(s)	72, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.