Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Forward (+)

4614969 .. 4615514

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTGCGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCATACTTCAAGCTCTGGCGCTGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGATAACCGAGAGGGCAACGACAAATTTGAGGGCGACGACGAGCCAATTGACTGTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATAGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAACATGAAGTCTGAAGTTCAGAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.77

Weight (kDa)

5.29

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	153, 249
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	206
AciI	CCGC	4 cut(s)	66, 123, 138, 204
AcsI	RAATTY	3 cut(s)	173, 305, 459
AcyI	GRCGYC	2 cut(s)	150, 246
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	2 cut(s)	211, 229
AluI	AGCT	2 cut(s)	211, 229
AoxI	GGCC	2 cut(s)	130, 382
ApeKI	GCWGC	2 cut(s)	5, 208
ApoI	RAATTY	3 cut(s)	173, 305, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspLEI	GCGC	2 cut(s)	208, 237
AspS9I	GGNCC	3 cut(s)	37, 95, 399
AsuHPI	GGTGA	6 cut(s)	103, 112, 145, 205, 370, 445
AvaII	GGWCC	3 cut(s)	37, 95, 399
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	70, 122, 164
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	6, 139, 209
BlsI	GCNGC	3 cut(s)	7, 140, 210
Bme18I	GGWCC	3 cut(s)	37, 95, 399
BmgT120I	GGNCC	3 cut(s)	37, 95, 399
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	150, 246
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	132, 384
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	132, 384
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	66, 123, 138, 204
BspANI	GGCC	2 cut(s)	132, 384
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	2 cut(s)	150, 246
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	2 cut(s)	150, 246
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	208, 237
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	132, 384
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	2 cut(s)	208, 237
Cfr13I	GGNCC	3 cut(s)	37, 95, 399
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	106, 439
CviJI	RGCY	8 cut(s)	5, 132, 199, 211, 229, 325, 384, 421
CviKI_1	RGCY	8 cut(s)	5, 132, 199, 211, 229, 325, 384, 421
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	37, 95, 399
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	2 cut(s)	109, 442
FaiI	YATR	5 cut(s)	51, 58, 107, 220, 440
FatI	CATG	2 cut(s)	105, 438
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	6, 139, 209
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	6, 139, 209
GlaI	GCGC	2 cut(s)	207, 236
GluI	GCNGC	3 cut(s)	6, 139, 209
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	132, 384
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	2 cut(s)	208, 237
Hin1I	GRCGYC	2 cut(s)	150, 246
Hin1II	CATG	2 cut(s)	109, 442
Hin6I	GCGC	2 cut(s)	206, 235
HinP1I	GCGC	2 cut(s)	206, 235
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	73, 192
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	6 cut(s)	103, 112, 145, 205, 370, 445
Hpy166II	GTNNAC	2 cut(s)	148, 436
Hpy188I	TCNGA	5 cut(s)	251, 367, 403, 448, 456
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	148, 436
Hpy99I	CGWCG	6 cut(s)	149, 152, 248, 251, 320, 323
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	3 cut(s)	144, 150, 246
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	3 cut(s)	144, 150, 246
Hsp92I	GRCGYC	2 cut(s)	150, 246
Hsp92II	CATG	2 cut(s)	109, 442
HspAI	GCGC	2 cut(s)	206, 235
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	20, 78, 202, 217, 223
Lsp1109I	GCAGC	1 cut(s)	220
MaeII	ACGT	3 cut(s)	144, 150, 246
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	2 cut(s)	327, 408
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	5 cut(s)	173, 305, 327, 408, 459
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	229, 426
MseI	TTAA	1 cut(s)	393
MspI	CCGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	327, 408
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	109, 442
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	7, 140, 210
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspPI	GGNCC	3 cut(s)	37, 95, 399
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	3 cut(s)	6, 139, 209
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	37, 95, 399
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	201
SgrDI	CGTCGACG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	37, 95, 399
Sse9I	AATT	5 cut(s)	173, 305, 327, 408, 459
SsiI	CCGC	4 cut(s)	66, 123, 138, 204
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	3 cut(s)	147, 153, 249
TaqI	TCGA	3 cut(s)	71, 147, 195
TasI	AATT	5 cut(s)	173, 305, 327, 408, 459
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	5, 208
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	455
VpaK11BI	GGWCC	3 cut(s)	37, 95, 399
XapI	RAATTY	3 cut(s)	173, 305, 459
XmiI	GTMKAC	1 cut(s)	147
ZraI	GACGTC	2 cut(s)	151, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.