Rh6CG244800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003285
Physical Location & Seq
Reverse (-)
41206399 .. 41206776
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG244800.1

Sequence Viewer

Length: 378 bp
ATGACCACTATCTTCAACGCCCACGGCCTCCGCGGCTACGTCAACGGCTCCATCAAAACCCCCGACAAATTCGCCCTCAACGCCCGAGGCGAGCCGACCTCGCAGCTCACCTCCGAGTTCAAGCTTTGGCGCCGCTACTACGCCGGAGTCAAGGTCGTCATCAACGCCACGCTGTCCTTGTCGGCTCTGCCGCACATCATCGACTCCGACACACTCACCTCACATCTCAATCAATCACAGCCGCTTCTTCGATTCTCGATAGCTTTGATTTCTAGGGTTTATAATTTGGTTGAGGTGAGGCCATGGAGATTGGCTCGGAGGGAGAGAAGACGAGAGCTTAGGCTCAAGAAGGTGAGATCAGAACCATGTGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

10.93

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 1 cut(s) 33
AciI CCGC 5 cut(s) 31, 33, 133, 191, 242
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 130
AgsI TTSAA 2 cut(s) 16, 121
AluBI AGCT 4 cut(s) 106, 124, 263, 337
AluI AGCT 4 cut(s) 106, 124, 263, 337
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 2 cut(s) 25, 299
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 100, 208, 307, 364
AvaI CYCGRG 1 cut(s) 84
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 40, 61
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 5 cut(s) 34, 104, 133, 191, 242
BlsI GCNGC 5 cut(s) 35, 105, 134, 192, 243
BmeT110I CYCGRG 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 49, 131
BpiI GAAGAC 1 cut(s) 334
BplI GAGNNNNNCTC 4 cut(s) 83, 115, 298, 330
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 130
BsaJI CCNNGG 4 cut(s) 22, 31, 85, 302
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
BseDI CCNNGG 4 cut(s) 22, 31, 85, 302
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 27, 301
BshNI GGYRCC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 144
BsnI GGCC 2 cut(s) 27, 301
BsoBI CYCGRG 1 cut(s) 84
Bsp143I GATC 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 5 cut(s) 31, 33, 133, 191, 242
BspANI GGCC 2 cut(s) 27, 301
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 49, 131
BspT107I GGYRCC 1 cut(s) 129
BssECI CCNNGG 4 cut(s) 22, 31, 85, 302
BssMI GATC 1 cut(s) 356
BssNI GRCGYC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 3 cut(s) 22, 31, 302
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 3 cut(s) 33, 80, 100
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 27, 301
BtgI CCRYGG 3 cut(s) 22, 31, 302
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 132
Cfr42I CCGCGG 1 cut(s) 34
CviAII CATG 2 cut(s) 303, 366
DdeI CTNAG 1 cut(s) 338
DinI GGCGCC 1 cut(s) 131
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 302
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 306, 369
FaiI YATR 3 cut(s) 282, 304, 367
FatI CATG 2 cut(s) 302, 365
Fnu4HI GCNGC 5 cut(s) 34, 104, 133, 191, 242
Fsp4HI GCNGC 5 cut(s) 34, 104, 133, 191, 242
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 131
GluI GCNGC 5 cut(s) 34, 104, 133, 191, 242
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 27, 301
HapII CCGG 1 cut(s) 144
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 2 cut(s) 306, 369
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 3 cut(s) 147, 203, 252
HpaII CCGG 1 cut(s) 144
HphI GGTGA 4 cut(s) 100, 208, 307, 364
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 4 cut(s) 115, 208, 318, 361
Hpy188III TCNNGA 2 cut(s) 256, 346
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 80, 100
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 2 cut(s) 306, 369
HspAI GCGC 1 cut(s) 130
KasI GGCGCC 1 cut(s) 129
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 3 cut(s) 4, 239, 339
MluCI AATT 2 cut(s) 68, 283
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 2 cut(s) 156, 197
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 9 cut(s) 38, 80, 86, 109, 121, 229, 286, 291, 312
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 33, 80, 100
NarI GGCGCC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 302
NdeII GATC 1 cut(s) 356
NlaIII CATG 2 cut(s) 306, 369
NlaIV GGNNCC 2 cut(s) 49, 131
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 5 cut(s) 35, 105, 134, 192, 243
PleI GAGTC 2 cut(s) 155, 197
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 2 cut(s) 155, 197
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 49, 131
SacII CCGCGG 1 cut(s) 34
SatI GCNGC 5 cut(s) 34, 104, 133, 191, 242
Sau3AI GATC 1 cut(s) 356
SchI GAGTC 2 cut(s) 156, 197
SfoI GGCGCC 1 cut(s) 131
Sfr303I CCGCGG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 68, 283
SsiI CCGC 5 cut(s) 31, 33, 133, 191, 242
SspDI GGCGCC 1 cut(s) 129
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 302
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 201, 250, 257
TasI AATT 2 cut(s) 68, 283
TauI GCSGC 4 cut(s) 36, 135, 193, 244
TfiI GAWTC 1 cut(s) 252
TseI GCWGC 1 cut(s) 103
XapI RAATTY 1 cut(s) 68
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.