Rorug06G0129500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003285
Physical Location & Seq
Reverse (-)
17950739 .. 17953901
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0129500.1

Sequence Viewer

Length: 1275 bp
ATGAACAGAGCGCTGCCGGAGATGTTGAACTGTATGAACGCGCCGGGAGGCCTCGTCGCCGGAAACTGTACGGACATGACGGTGCTGGACAGACAGAGGACTCGGATGAGGTGGCAGCAAGACCAGTTCCAGCAGCAGCCGCAGCAGCAGCACCAAGGCTACTTTGGCGGGAACGAGCTCAATGGGGTGTTCAATCACGTGCCAATTCAGGCGAGCCAGGTTCAGAATTTCCAGGGGTTGATCGGGCTCGGCGGCGACTTGGGGATGGGGCAGGCGGTGAAACCCGACCTGAGTTCGGAAAATGGGTGGACCGAATTGGGTTATGGGTCTTGTCGGTTTGAGATGAATAATATTTCCAGGACTTTCAGCTGCCCGCCCAAAGTTGCCGCCGAGACTGAGAGCAACAACGCCGTCGCGCCTGCCAAGATTAGCTCGCCGGCCGGCAAGGAAAGCTTTAAGAAGAGGAAAGCCGATAAGGCACAAAACAATAAGGCTGTAGCAGAAGATGATTCCTCGGACAAAAGAATGAAAGGGTGTGCAGAGGAGGGTGACTCCAAGATCACAGAACAAAATAGCACCAAGAACAACGACAGAGAATCTTCTGCTGATACTTCAAAAGAGAATTCAAAAGCTTCCGAGGTTCAAAAGCCGGATTACATTCATGTCCGGGCGCGCCGAGGTCAGGCCACTGATAGCCACAGCTTGGCTGAGAGAGTGAGGAGGGAAAAAATTAGTGAAAGAATGAAGTATCTGCAAGATTTAGTACCAGGGTGCAACAAGATCACTGGCAAGGCTGGTATGCTAGACGAAATCATCAATTATGTTCAATCCCTTCAACGACAAGTAGAGTTCCTGTCTATGAAACTAGCTGCTGTTAATCCGAGGCTTGATTTCAACATCGACGACTTGTTTACAAAAGAGATGTTTCCTGCAAACATGGCCAATTTTCCGACAATTGGAATGTCATCAGAAATGACTAGTTCTGCATATCTTCAGTTTAATCACATACAACAATTGCTTCAATGTTCGGGATTGGAGAGTGGGATAACTTCCCCTGATTCAGCGCTGCTTCGAAGAAGCATCAGCGCTCCTATATCAATCCCTGAAACATTTGTTGACACATCCTGCTTCACGCAAGTCCAACCTCCTACAACTTGGGATGCCGATATACAAAACCTTTTCAATGTGGAATTTCATCAAGGAAGAACAGCACAATTTCCGTCTCAACCATTTACAGGTTCCATTGAAGCTAGCAATTTAAAGATGGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

424

Amino Acids

47.03

Weight (kDa)

5.82

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 232 - 279 5.2e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 3 cut(s) 41, 416, 673
AciI CCGC 6 cut(s) 140, 168, 252, 275, 374, 387
AcoI YGGCCR 2 cut(s) 438, 939
AcsI RAATTY 3 cut(s) 226, 622, 1190
AcuI CTGAAG 1 cut(s) 977
AcvI CACGTG 1 cut(s) 199
AfaI GTAC 2 cut(s) 70, 765
AfeI AGCGCT 3 cut(s) 12, 1065, 1087
AfiI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 956, 1235
AhlI ACTAGT 1 cut(s) 977
AjnI CCWGG 4 cut(s) 216, 231, 356, 766
AluBI AGCT 8 cut(s) 178, 369, 432, 453, 632, 702, 869, 1250
AluI AGCT 8 cut(s) 178, 369, 432, 453, 632, 702, 869, 1250
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 386, 1227
Aor51HI AGCGCT 3 cut(s) 12, 1065, 1087
AoxI GGCC 4 cut(s) 49, 438, 684, 939
ApoI RAATTY 3 cut(s) 226, 622, 1190
AscI GGCGCGCC 1 cut(s) 671
AspLEI GCGC 7 cut(s) 13, 43, 418, 673, 675, 1066, 1088
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 2 cut(s) 45, 668
AsuHPI GGTGA 2 cut(s) 289, 560
AsuII TTCGAA 1 cut(s) 1072
AsuNHI GCTAGC 1 cut(s) 1250
AvaII GGWCC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 2 cut(s) 180, 249
BbrPI CACGTG 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 856, 1053
BccI CCATC 2 cut(s) 259, 1258
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 4 cut(s) 218, 233, 358, 768
BcnI CCSGG 2 cut(s) 45, 668
BcoDI GTCTC 2 cut(s) 386, 1227
BcuI ACTAGT 1 cut(s) 977
BfaI CTAG 4 cut(s) 803, 866, 978, 1251
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 3 cut(s) 14, 1067, 1089
BglI GCCNNNNNGGC 1 cut(s) 476
Bme1390I CCNGG 6 cut(s) 45, 218, 233, 358, 668, 768
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 1240
BmrFI CCNGG 6 cut(s) 45, 218, 233, 358, 668, 768
BmsI GCATC 2 cut(s) 1089, 1150
BmtI GCTAGC 1 cut(s) 1254
BplI GAGNNNNNCTC 2 cut(s) 536, 568
Bpu14I TTCGAA 1 cut(s) 1072
BpuMI CCSGG 2 cut(s) 45, 668
BsaAI YACGTR 1 cut(s) 199
BsaJI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 881
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 5 cut(s) 295, 682, 703, 956, 1235
Bse118I RCCGGY 2 cut(s) 436, 440
Bse1I ACTGG 2 cut(s) 124, 790
BseBI CCWGG 4 cut(s) 218, 233, 358, 768
BseDI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 881
BseGI GGATG 4 cut(s) 111, 270, 1121, 1165
BseLI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 956, 1235
BseMII CTCAG 3 cut(s) 281, 387, 699
BseNI ACTGG 2 cut(s) 124, 790
BsePI GCGCGC 1 cut(s) 671
BseRI GAGGAG 2 cut(s) 557, 733
BseX3I CGGCCG 1 cut(s) 438
BseXI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 856, 1053
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 3 cut(s) 41, 416, 673
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 51, 440, 686, 941
BsiEI CGRYCG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 7 cut(s) 17, 44, 60, 437, 441, 650, 667
BslI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 956, 1235
BsmAI GTCTC 2 cut(s) 386, 1227
BsmBI CGTCTC 1 cut(s) 1227
BsnI GGCC 4 cut(s) 51, 440, 686, 941
Bsp119I TTCGAA 1 cut(s) 1072
Bsp1286I GDGCHC 2 cut(s) 180, 249
Bsp143I GATC 3 cut(s) 240, 558, 780
BspACI CCGC 6 cut(s) 140, 168, 252, 275, 374, 387
BspANI GGCC 4 cut(s) 51, 440, 686, 941
BspCNI CTCAG 3 cut(s) 282, 388, 700
BspFNI CGCG 3 cut(s) 41, 416, 673
BspLI GGNNCC 1 cut(s) 1240
BspOI GCTAGC 1 cut(s) 1254
BspT104I TTCGAA 1 cut(s) 1072
BsrFI RCCGGY 2 cut(s) 436, 440
BsrI ACTGG 2 cut(s) 124, 790
BssAI RCCGGY 2 cut(s) 436, 440
BssECI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 881
BssHII GCGCGC 1 cut(s) 671
BssMI GATC 3 cut(s) 240, 558, 780
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 4 cut(s) 218, 233, 358, 768
Bst4CI ACNGT 3 cut(s) 32, 68, 82
Bst6I CTCTTC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 1072
BstC8I GCNNGC 9 cut(s) 214, 273, 374, 420, 434, 438, 442, 673, 1252
BstDEI CTNAG 3 cut(s) 290, 396, 708
BstF5I GGATG 4 cut(s) 111, 270, 1121, 1165
BstFNI CGCG 3 cut(s) 41, 416, 673
BstH2I RGCGCY 3 cut(s) 14, 1067, 1089
BstHHI GCGC 7 cut(s) 13, 43, 418, 673, 675, 1066, 1088
BstKTI GATC 3 cut(s) 243, 561, 783
BstMAI GTCTC 2 cut(s) 386, 1227
BstMBI GATC 3 cut(s) 240, 558, 780
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 938
BstNI CCWGG 4 cut(s) 218, 233, 358, 768
BstSCI CCNGG 6 cut(s) 43, 216, 231, 356, 666, 766
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 3 cut(s) 41, 416, 673
BstV1I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 856, 1053
BstZI CGGCCG 1 cut(s) 438
BsuRI GGCC 4 cut(s) 51, 440, 686, 941
BtsCI GGATG 4 cut(s) 111, 270, 1121, 1165
BtsIMutI CAGTG 2 cut(s) 687, 783
Cac8I GCNNGC 9 cut(s) 214, 273, 374, 420, 434, 438, 442, 673, 1252
CfoI GCGC 7 cut(s) 13, 43, 418, 673, 675, 1066, 1088
Cfr10I RCCGGY 2 cut(s) 436, 440
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 69, 764
CviAII CATG 3 cut(s) 76, 662, 937
CviQI GTAC 2 cut(s) 69, 764
DdeI CTNAG 3 cut(s) 290, 396, 708
DpnI GATC 3 cut(s) 242, 560, 782
DpnII GATC 3 cut(s) 240, 558, 780
DraI TTTAAA 1 cut(s) 1260
EaeI YGGCCR 2 cut(s) 438, 939
EagI CGGCCG 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 180, 249
Eco47I GGWCC 1 cut(s) 309
Eco47III AGCGCT 3 cut(s) 12, 1065, 1087
Eco52I CGGCCG 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 977
Eco72I CACGTG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 4 cut(s) 216, 231, 356, 766
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 180, 249
ErhI CCWWGG 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 1227
FaeI CATG 3 cut(s) 79, 665, 940
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 3 cut(s) 75, 661, 936
FauI CCCGC 2 cut(s) 161, 381
FokI GGATG 4 cut(s) 118, 277, 1108, 1172
FriOI GRGCYC 2 cut(s) 180, 249
FspBI CTAG 4 cut(s) 803, 866, 978, 1251
GlaI GCGC 7 cut(s) 12, 42, 417, 672, 674, 1065, 1087
HaeII RGCGCY 3 cut(s) 14, 1067, 1089
HaeIII GGCC 4 cut(s) 51, 440, 686, 941
HapII CCGG 7 cut(s) 17, 44, 60, 437, 441, 650, 667
HhaI GCGC 7 cut(s) 13, 43, 418, 673, 675, 1066, 1088
Hin1II CATG 3 cut(s) 79, 665, 940
Hin6I GCGC 7 cut(s) 11, 41, 416, 671, 673, 1064, 1086
HinP1I GCGC 7 cut(s) 11, 41, 416, 671, 673, 1064, 1086
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HindIII AAGCTT 2 cut(s) 451, 630
HinfI GANTC 5 cut(s) 100, 509, 551, 596, 1058
HpaII CCGG 7 cut(s) 17, 44, 60, 437, 441, 650, 667
HphI GGTGA 2 cut(s) 289, 560
Hpy166II GTNNAC 3 cut(s) 309, 912, 1117
Hpy188I TCNGA 8 cut(s) 105, 225, 298, 517, 637, 882, 951, 970
Hpy188III TCNNGA 1 cut(s) 1029
Hpy8I GTNNAC 3 cut(s) 309, 912, 1117
Hpy99I CGWCG 3 cut(s) 59, 416, 905
HpyAV CCTTC 1 cut(s) 842
HpyCH4III ACNGT 3 cut(s) 32, 68, 82
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 539, 754, 774, 932, 986
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 938
HpyF3I CTNAG 3 cut(s) 290, 396, 708
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 79, 665, 940
HspAI GCGC 7 cut(s) 11, 41, 416, 671, 673, 1064, 1086
KroI GCCGGC 2 cut(s) 436, 440
KroNI GCCGGC 2 cut(s) 438, 442
Kzo9I GATC 3 cut(s) 240, 558, 780
LmnI GCTCC 1 cut(s) 1093
Lsp1109I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 856, 1053
LweI GCATC 2 cut(s) 1089, 1150
MaeI CTAG 4 cut(s) 803, 866, 978, 1251
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 548
MalI GATC 3 cut(s) 242, 560, 782
MboI GATC 3 cut(s) 240, 558, 780
MboII GAAGA 6 cut(s) 472, 515, 591, 983, 1086, 1215
MfeI CAATTG 2 cut(s) 954, 1013
MhlI GDGCHC 2 cut(s) 180, 249
MlsI TGGCCA 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 2 cut(s) 94, 545
MmeI TCCRAC 2 cut(s) 974, 1165
Mox20I TGGCCA 1 cut(s) 941
MroNI GCCGGC 2 cut(s) 436, 440
MscI TGGCCA 1 cut(s) 941
MseI TTAA 4 cut(s) 456, 876, 999, 1259
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 7 cut(s) 17, 44, 60, 437, 441, 650, 667
MspR9I CCNGG 6 cut(s) 45, 218, 233, 358, 668, 768
MunI CAATTG 2 cut(s) 954, 1013
MvaI CCWGG 4 cut(s) 218, 233, 358, 768
MvnI CGCG 3 cut(s) 41, 416, 673
MwoI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 938
NaeI GCCGGC 2 cut(s) 438, 442
NciI CCSGG 2 cut(s) 45, 668
NdeII GATC 3 cut(s) 240, 558, 780
NgoMIV GCCGGC 2 cut(s) 436, 440
NheI GCTAGC 1 cut(s) 1250
NlaIII CATG 3 cut(s) 79, 665, 940
NlaIV GGNNCC 1 cut(s) 1240
NmeAIII GCCGAG 3 cut(s) 228, 415, 701
NmuCI GTSAC 1 cut(s) 548
NspV TTCGAA 1 cut(s) 1072
PalAI GGCGCGCC 1 cut(s) 671
PauI GCGCGC 1 cut(s) 671
PceI AGGCCT 1 cut(s) 51
PdiI GCCGGC 2 cut(s) 438, 442
PfeI GAWTC 3 cut(s) 509, 596, 1058
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 2 cut(s) 94, 545
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 2 cut(s) 94, 545
Ppu21I YACGTR 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 4 cut(s) 216, 231, 356, 766
PspCI CACGTG 1 cut(s) 199
PspGI CCWGG 4 cut(s) 216, 231, 356, 766
PspN4I GGNNCC 1 cut(s) 1240
PspPI GGNCC 1 cut(s) 309
PteI GCGCGC 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 369
RsaI GTAC 2 cut(s) 70, 765
RsaNI GTAC 2 cut(s) 69, 764
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 4 cut(s) 456, 876, 999, 1259
Sau3AI GATC 3 cut(s) 240, 558, 780
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 2 cut(s) 94, 545
ScrFI CCNGG 6 cut(s) 45, 218, 233, 358, 668, 768
SduI GDGCHC 2 cut(s) 180, 249
SfaNI GCATC 2 cut(s) 1089, 1150
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 1072
SgsI GGCGCGCC 1 cut(s) 671
SinI GGWCC 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 977
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 6 cut(s) 140, 168, 252, 275, 374, 387
SspI AATATT 1 cut(s) 352
SspMI CTAG 4 cut(s) 803, 866, 978, 1251
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 6 cut(s) 43, 216, 231, 356, 666, 766
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 32, 68, 82
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 900, 1072
TaqII GACCGA 1 cut(s) 326
TauI GCSGC 3 cut(s) 142, 255, 389
TfiI GAWTC 3 cut(s) 509, 596, 1058
Tru1I TTAA 4 cut(s) 456, 876, 999, 1259
Tru9I TTAA 4 cut(s) 456, 876, 999, 1259
TscAI CASTG 2 cut(s) 694, 790
TseFI GTSAC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 8 cut(s) 17, 50, 359, 542, 650, 758, 875, 1184
TspGWI ACGGA 2 cut(s) 86, 1209
TspRI CASTG 2 cut(s) 694, 790
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 3 cut(s) 226, 622, 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 4 cut(s) 803, 866, 978, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.