Rh2BG187300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003285
Physical Location & Seq
Forward (+)
16731728 .. 16732410
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG187300.1

Sequence Viewer

Length: 507 bp
ATGGCCGCTTCCTCCTACCTGAAAACCCTAGATCTGGTCCTCACACATCGTATCTCATGCCCATCCGCCTCGAATCCACCAACTACTTCATCTGGTCCTCATCTCATGACCACCATCTTCACCGCCCACGGCCTCCGAGGCTACGTCGACGACACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGGCGAACCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACGTCGGAGTCAAGACGATTACAAAGGGAGGCGACTCGGTGAATGTTTATGTGGGGAGGATTGATGAGATAAGGACGAAGTTGGCCGGGTTTTCGGTGATGGTGGACGACGCGGAGATGATTGGGCATGCTCTGAGGGGGTTGCCAGAGGATTATGAGGCGTTTGGGAACTCGATTACGGCGAGGAATGAGCCACTGCTGTTGAATGAGTTTTATGTGTTGCTGCTGGCTGAGGAGGCTTCTATTTTGGCAGGGAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

168

Amino Acids

18.24

Weight (kDa)

5.3

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 206, 356
AciI CCGC 5 cut(s) 6, 66, 123, 204, 356
AcoI YGGCCR 2 cut(s) 3, 327
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 2 cut(s) 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 226, 448
AluBI AGCT 2 cut(s) 211, 229
AluI AGCT 2 cut(s) 211, 229
AoxI GGCC 3 cut(s) 3, 130, 327
ApeKI GCWGC 2 cut(s) 208, 466
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 2 cut(s) 37, 95
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 4 cut(s) 112, 205, 295, 352
AvaII GGWCC 2 cut(s) 37, 95
BanI GGYRCC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 220, 453
BccI CCATC 4 cut(s) 70, 122, 164, 337
BceAI ACGGC 2 cut(s) 145, 438
BcnI CCSGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 138
BglII AGATCT 1 cut(s) 31
BisI GCNGC 3 cut(s) 6, 209, 467
BlsI GCNGC 3 cut(s) 7, 210, 468
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 331
BsaHI GRCGYC 2 cut(s) 235, 246
BsaJI CCNNGG 2 cut(s) 127, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 127, 136
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 3 cut(s) 231, 368, 465
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 2 cut(s) 220, 453
Bsh1236I CGCG 2 cut(s) 206, 356
BshFI GGCC 3 cut(s) 5, 132, 329
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 189, 238, 330
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 3 cut(s) 5, 132, 329
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 5 cut(s) 6, 66, 123, 204, 356
BspANI GGCC 3 cut(s) 5, 132, 329
BspCNI CTCAG 3 cut(s) 230, 369, 466
BspFNI CGCG 2 cut(s) 206, 356
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 127, 136
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 2 cut(s) 235, 246
BstACI GRCGYC 2 cut(s) 235, 246
BstC8I GCNNGC 2 cut(s) 372, 471
BstDEI CTNAG 3 cut(s) 217, 377, 474
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 2 cut(s) 206, 356
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 138, 185, 479
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 329
BstUI CGCG 2 cut(s) 206, 356
BstV1I GCAGC 2 cut(s) 220, 453
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 5, 132, 329
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 372, 471
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 37, 95
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 3 cut(s) 57, 106, 371
CviJI RGCY 9 cut(s) 5, 132, 141, 211, 229, 329, 436, 473, 482
CviKI_1 RGCY 9 cut(s) 5, 132, 141, 211, 229, 329, 436, 473, 482
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 217, 377, 474
DinI GGCGCC 1 cut(s) 236
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 3, 327
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 37, 95
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 3 cut(s) 60, 109, 374
FaiI YATR 6 cut(s) 58, 107, 294, 372, 399, 459
FatI CATG 3 cut(s) 56, 105, 370
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 6, 209, 467
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 6, 209, 467
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 3 cut(s) 6, 209, 467
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 3 cut(s) 5, 132, 329
HapII CCGG 3 cut(s) 189, 238, 330
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 2 cut(s) 235, 246
Hin1II CATG 3 cut(s) 60, 109, 374
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 4 cut(s) 73, 252, 278, 499
HpaII CCGG 3 cut(s) 189, 238, 330
HphI GGTGA 4 cut(s) 112, 205, 295, 352
Hpy166II GTNNAC 2 cut(s) 148, 349
Hpy188I TCNGA 4 cut(s) 137, 220, 251, 378
Hpy188III TCNNGA 2 cut(s) 106, 256
Hpy8I GTNNAC 2 cut(s) 148, 349
Hpy99I CGWCG 5 cut(s) 149, 152, 248, 251, 356
HpyCH4IV ACGT 2 cut(s) 144, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 185, 479
HpyF3I CTNAG 3 cut(s) 217, 377, 474
HpySE526I ACGT 2 cut(s) 144, 246
Hsp92I GRCGYC 2 cut(s) 235, 246
Hsp92II CATG 3 cut(s) 60, 109, 374
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 220, 453
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 144, 246
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 31
MluCI AATT 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 2 cut(s) 261, 272
MmeI TCCRAC 1 cut(s) 229
MspI CCGG 3 cut(s) 189, 238, 330
MspR9I CCNGG 1 cut(s) 331
MvnI CGCG 2 cut(s) 206, 356
MwoI GCNNNNNNNGC 3 cut(s) 138, 185, 479
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 331
NdeII GATC 1 cut(s) 31
NlaIII CATG 3 cut(s) 60, 109, 374
NlaIV GGNNCC 1 cut(s) 236
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 422
PfeI GAWTC 2 cut(s) 73, 499
PkrI GCNGC 3 cut(s) 7, 210, 468
PleI GAGTC 2 cut(s) 260, 272
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 2 cut(s) 260, 272
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 37, 95
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 3 cut(s) 6, 209, 467
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 2 cut(s) 261, 272
ScrFI CCNGG 1 cut(s) 331
SetI ASST 6 cut(s) 21, 147, 213, 218, 231, 249
SfoI GGCGCC 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 2 cut(s) 37, 95
SphI GCATGC 1 cut(s) 374
Sse9I AATT 1 cut(s) 173
SsiI CCGC 5 cut(s) 6, 66, 123, 204, 356
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 329
TaiI ACGT 2 cut(s) 147, 249
TaqI TCGA 3 cut(s) 71, 147, 416
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 73, 499
TscAI CASTG 1 cut(s) 444
TseI GCWGC 2 cut(s) 208, 466
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 444
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.