Rh4DG008700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003285
Physical Location & Seq
Forward (+)
1384492 .. 1384974
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG008700.1

Sequence Viewer

Length: 483 bp
ATGGCCGCTTCCTCCTACCCGGAAACCCCCCAGACGTCCTCCTCTTATCCATATGCAATCTCATGCCCATCCGCCTCGAATCCACCAACTGGATATGGTCTCATCATGACCACCATCTTCACCGCCCACGGCTTTCGCGGCTACGTCGACGGCACCATCAAAACCCCCGACAAATTCACCCTCAATGCTGGAGGCGAGCCCACCGCGCAGCTCACCTCAGATTTCAAGCTCTGGAGCCGGTACGACTCCGGAGTCAAGGTCGAAGTGTATGTGGGGAGGATTGATGAGATAAGGACGAAGCTGGCTGGGTTTTCAGTGATGGTGGACGATGCGGAGATGATTGGGCATGTTCTTAGGGGGTTGTCAGAGGATTATAAGGCGTTTCGAAACTCGATTACGGTGAGGAATGAGCCGCTACTGTTGAATGAGTTTTATGTGCTGTTGCTGGCGGAGGAGGCTTCTATTTTGGCAAGGAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

5.15

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 138, 206
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 8 cut(s) 6, 72, 123, 138, 204, 332, 413, 449
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 226, 424
AluBI AGCT 3 cut(s) 211, 229, 301
AluI AGCT 3 cut(s) 211, 229, 301
Alw26I GTCTC 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 112, 169, 205, 412
AsuII TTCGAA 1 cut(s) 385
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 76, 122, 164, 313
BceAI ACGGC 2 cut(s) 145, 166
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 104
BisI GCNGC 4 cut(s) 6, 139, 209, 413
BlsI GCNGC 4 cut(s) 7, 140, 210, 414
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 154, 236
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 319
BpmI CTGGAG 2 cut(s) 210, 253
Bpu14I TTCGAA 1 cut(s) 385
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 94
BseAI TCCGGA 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 31, 467
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 138, 206
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 20, 238, 249
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 248
BspACI CCGC 8 cut(s) 6, 72, 123, 138, 204, 332, 413, 449
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 2 cut(s) 138, 206
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 154, 236
BspT104I TTCGAA 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 400, 420
BstACI GRCGYC 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 197, 303, 447
BstDEI CTNAG 2 cut(s) 217, 353
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 138, 206
BstHHI GCGC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 138, 205, 455
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 18
BstUI CGCG 2 cut(s) 138, 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 197, 303, 447
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 237
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 63, 106, 347
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 217, 353
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 61, 464
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 3 cut(s) 66, 109, 350
FaiI YATR 9 cut(s) 52, 54, 64, 96, 107, 270, 348, 375, 435
FatI CATG 3 cut(s) 62, 105, 346
FauNDI CATATG 1 cut(s) 52
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 6, 139, 209, 413
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 6, 139, 209, 413
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 6, 139, 209, 413
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 210, 253
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 20, 238, 249
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 66, 109, 350
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 4 cut(s) 79, 245, 252, 475
HpaII CCGG 3 cut(s) 20, 238, 249
HphI GGTGA 4 cut(s) 112, 169, 205, 412
Hpy166II GTNNAC 2 cut(s) 148, 325
Hpy188I TCNGA 2 cut(s) 220, 367
Hpy188III TCNNGA 3 cut(s) 106, 232, 249
Hpy8I GTNNAC 2 cut(s) 148, 325
Hpy99I CGWCG 2 cut(s) 149, 152
HpyCH4III ACNGT 2 cut(s) 400, 420
HpyCH4IV ACGT 2 cut(s) 35, 144
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 205, 455
HpyF3I CTNAG 2 cut(s) 217, 353
HpySE526I ACGT 2 cut(s) 35, 144
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 66, 109, 350
HspAI GCGC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 248
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 319
MaeII ACGT 2 cut(s) 35, 144
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 239, 261
MroI TCCGGA 1 cut(s) 248
MspI CCGG 3 cut(s) 20, 238, 249
MspR9I CCNGG 1 cut(s) 20
MvnI CGCG 2 cut(s) 138, 206
MwoI GCNNNNNNNGC 3 cut(s) 138, 205, 455
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 52
NlaIII CATG 3 cut(s) 66, 109, 350
NlaIV GGNNCC 2 cut(s) 154, 236
NspI RCATGY 1 cut(s) 350
NspV TTCGAA 1 cut(s) 385
PagI TCATGA 1 cut(s) 105
PfeI GAWTC 2 cut(s) 79, 475
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 4 cut(s) 7, 140, 210, 414
PleI GAGTC 2 cut(s) 239, 260
PpsI GAGTC 2 cut(s) 239, 260
PsiI TTATAA 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 154, 236
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 4 cut(s) 6, 139, 209, 413
SchI GAGTC 2 cut(s) 239, 261
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 201
SetI ASST 7 cut(s) 38, 147, 213, 218, 231, 261, 303
SfaNI GCATC 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 385
SgrDI CGTCGACG 1 cut(s) 146
Sse9I AATT 1 cut(s) 173
SsiI CCGC 8 cut(s) 6, 72, 123, 138, 204, 332, 413, 449
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 400, 420
TaiI ACGT 2 cut(s) 38, 147
TaqI TCGA 5 cut(s) 77, 147, 261, 385, 392
TasI AATT 1 cut(s) 173
TauI GCSGC 3 cut(s) 8, 141, 415
TfiI GAWTC 2 cut(s) 79, 475
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 208
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 89
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 147
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.